Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001893-TA|BGIBMGA001893-PA|IPR004365|nucleic acid
binding, OB-fold, tRNA/helicase-type, IPR008994|Nucleic acid-binding,
OB-fold
(127 letters)
Database: fruitfly
52,641 sequences; 24,830,863 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL031765-7|CAA21125.1| 1398|Drosophila melanogaster EG:22E5.8 pr... 28 4.3
AE014298-317|AAF45711.1| 1398|Drosophila melanogaster CG4290-PA ... 28 4.3
AY071391-1|AAL49013.1| 224|Drosophila melanogaster RE44901p pro... 27 7.5
AY060887-1|AAL28435.1| 224|Drosophila melanogaster GM04535p pro... 27 7.5
AM294918-1|CAL26904.1| 224|Drosophila melanogaster CG8392 protein. 27 7.5
AM294917-1|CAL26903.1| 224|Drosophila melanogaster CG8392 protein. 27 7.5
AM294916-1|CAL26902.1| 224|Drosophila melanogaster CG8392 protein. 27 7.5
AM294915-1|CAL26901.1| 224|Drosophila melanogaster CG8392 protein. 27 7.5
AM294914-1|CAL26900.1| 224|Drosophila melanogaster CG8392 protein. 27 7.5
AM294913-1|CAL26899.1| 224|Drosophila melanogaster CG8392 protein. 27 7.5
AM294912-1|CAL26898.1| 224|Drosophila melanogaster CG8392 protein. 27 7.5
AM294911-1|CAL26897.1| 224|Drosophila melanogaster CG8392 protein. 27 7.5
AM294910-1|CAL26896.1| 224|Drosophila melanogaster CG8392 protein. 27 7.5
AM294909-1|CAL26895.1| 224|Drosophila melanogaster CG8392 protein. 27 7.5
AM294908-1|CAL26894.1| 224|Drosophila melanogaster CG8392 protein. 27 7.5
AE013599-2160|AAF58077.1| 224|Drosophila melanogaster CG8392-PA... 27 7.5
>AL031765-7|CAA21125.1| 1398|Drosophila melanogaster EG:22E5.8
protein.
Length = 1398
Score = 27.9 bits (59), Expect = 4.3
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 11 KDLINKPTPIDVWLQGTIEQTVGRDILIISDTFGRAKITKCETADGVIDKNSI 63
KDL+ P+ V IE+T+G+ + R +ITK E A +IDK+ +
Sbjct: 127 KDLLKLKEPMRVGFYD-IERTIGKGNFAVVK-LARHRITKNEVAIKIIDKSQL 177
>AE014298-317|AAF45711.1| 1398|Drosophila melanogaster CG4290-PA
protein.
Length = 1398
Score = 27.9 bits (59), Expect = 4.3
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 11 KDLINKPTPIDVWLQGTIEQTVGRDILIISDTFGRAKITKCETADGVIDKNSI 63
KDL+ P+ V IE+T+G+ + R +ITK E A +IDK+ +
Sbjct: 127 KDLLKLKEPMRVGFYD-IERTIGKGNFAVVK-LARHRITKNEVAIKIIDKSQL 177
>AY071391-1|AAL49013.1| 224|Drosophila melanogaster RE44901p
protein.
Length = 224
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 54 ADGVIDK-NSIKKGTYCCIIGTAVKTKGVPEVQAY 87
A+ V DK I YCC G+A T+ + ++ AY
Sbjct: 42 ANRVTDKLTRITDKVYCCRSGSAADTQAIADIVAY 76
>AY060887-1|AAL28435.1| 224|Drosophila melanogaster GM04535p
protein.
Length = 224
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 54 ADGVIDK-NSIKKGTYCCIIGTAVKTKGVPEVQAY 87
A+ V DK I YCC G+A T+ + ++ AY
Sbjct: 42 ANRVTDKLTRITDKVYCCRSGSAADTQAIADIVAY 76
>AM294918-1|CAL26904.1| 224|Drosophila melanogaster CG8392
protein.
Length = 224
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 54 ADGVIDK-NSIKKGTYCCIIGTAVKTKGVPEVQAY 87
A+ V DK I YCC G+A T+ + ++ AY
Sbjct: 42 ANRVTDKLTRITDKVYCCRSGSAADTQAIADIVAY 76
>AM294917-1|CAL26903.1| 224|Drosophila melanogaster CG8392
protein.
Length = 224
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 54 ADGVIDK-NSIKKGTYCCIIGTAVKTKGVPEVQAY 87
A+ V DK I YCC G+A T+ + ++ AY
Sbjct: 42 ANRVTDKLTRITDKVYCCRSGSAADTQAIADIVAY 76
>AM294916-1|CAL26902.1| 224|Drosophila melanogaster CG8392
protein.
Length = 224
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 54 ADGVIDK-NSIKKGTYCCIIGTAVKTKGVPEVQAY 87
A+ V DK I YCC G+A T+ + ++ AY
Sbjct: 42 ANRVTDKLTRITDKVYCCRSGSAADTQAIADIVAY 76
>AM294915-1|CAL26901.1| 224|Drosophila melanogaster CG8392
protein.
Length = 224
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 54 ADGVIDK-NSIKKGTYCCIIGTAVKTKGVPEVQAY 87
A+ V DK I YCC G+A T+ + ++ AY
Sbjct: 42 ANRVTDKLTRITDKVYCCRSGSAADTQAIADIVAY 76
>AM294914-1|CAL26900.1| 224|Drosophila melanogaster CG8392
protein.
Length = 224
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 54 ADGVIDK-NSIKKGTYCCIIGTAVKTKGVPEVQAY 87
A+ V DK I YCC G+A T+ + ++ AY
Sbjct: 42 ANRVTDKLTRITDKVYCCRSGSAADTQAIADIVAY 76
>AM294913-1|CAL26899.1| 224|Drosophila melanogaster CG8392
protein.
Length = 224
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 54 ADGVIDK-NSIKKGTYCCIIGTAVKTKGVPEVQAY 87
A+ V DK I YCC G+A T+ + ++ AY
Sbjct: 42 ANRVTDKLTRITDKVYCCRSGSAADTQAIADIVAY 76
>AM294912-1|CAL26898.1| 224|Drosophila melanogaster CG8392
protein.
Length = 224
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 54 ADGVIDK-NSIKKGTYCCIIGTAVKTKGVPEVQAY 87
A+ V DK I YCC G+A T+ + ++ AY
Sbjct: 42 ANRVTDKLTRITDKVYCCRSGSAADTQAIADIVAY 76
>AM294911-1|CAL26897.1| 224|Drosophila melanogaster CG8392
protein.
Length = 224
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 54 ADGVIDK-NSIKKGTYCCIIGTAVKTKGVPEVQAY 87
A+ V DK I YCC G+A T+ + ++ AY
Sbjct: 42 ANRVTDKLTRITDKVYCCRSGSAADTQAIADIVAY 76
>AM294910-1|CAL26896.1| 224|Drosophila melanogaster CG8392
protein.
Length = 224
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 54 ADGVIDK-NSIKKGTYCCIIGTAVKTKGVPEVQAY 87
A+ V DK I YCC G+A T+ + ++ AY
Sbjct: 42 ANRVTDKLTRITDKVYCCRSGSAADTQAIADIVAY 76
>AM294909-1|CAL26895.1| 224|Drosophila melanogaster CG8392
protein.
Length = 224
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 54 ADGVIDK-NSIKKGTYCCIIGTAVKTKGVPEVQAY 87
A+ V DK I YCC G+A T+ + ++ AY
Sbjct: 42 ANRVTDKLTRITDKVYCCRSGSAADTQAIADIVAY 76
>AM294908-1|CAL26894.1| 224|Drosophila melanogaster CG8392
protein.
Length = 224
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 54 ADGVIDK-NSIKKGTYCCIIGTAVKTKGVPEVQAY 87
A+ V DK I YCC G+A T+ + ++ AY
Sbjct: 42 ANRVTDKLTRITDKVYCCRSGSAADTQAIADIVAY 76
>AE013599-2160|AAF58077.1| 224|Drosophila melanogaster CG8392-PA
protein.
Length = 224
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 54 ADGVIDK-NSIKKGTYCCIIGTAVKTKGVPEVQAY 87
A+ V DK I YCC G+A T+ + ++ AY
Sbjct: 42 ANRVTDKLTRITDKVYCCRSGSAADTQAIADIVAY 76
Database: fruitfly
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 24,830,863
Number of sequences in database: 52,641
Lambda K H
0.319 0.138 0.416
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,158,160
Number of Sequences: 52641
Number of extensions: 223472
Number of successful extensions: 486
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 486
Number of HSP's gapped (non-prelim): 16
length of query: 127
length of database: 24,830,863
effective HSP length: 77
effective length of query: 50
effective length of database: 20,777,506
effective search space: 1038875300
effective search space used: 1038875300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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