BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001893-TA|BGIBMGA001893-PA|IPR004365|nucleic acid binding, OB-fold, tRNA/helicase-type, IPR008994|Nucleic acid-binding, OB-fold (127 letters) Database: celegans 27,539 sequences; 12,573,161 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z77134-1|CAB00871.1| 293|Caenorhabditis elegans Hypothetical pr... 26 9.5 >Z77134-1|CAB00871.1| 293|Caenorhabditis elegans Hypothetical protein R09H10.2 protein. Length = 293 Score = 25.8 bits (54), Expect = 9.5 Identities = 13/45 (28%), Positives = 21/45 (46%) Query: 8 YFIKDLINKPTPIDVWLQGTIEQTVGRDILIISDTFGRAKITKCE 52 YF+K L+N+ D+W+ G + D F + IT C+ Sbjct: 191 YFLKKLVNRTFIDDIWIDGEGAEYGLFDHFYNGGAFDQNGITFCQ 235 Database: celegans Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 12,573,161 Number of sequences in database: 27,539 Lambda K H 0.319 0.138 0.416 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,259,919 Number of Sequences: 27539 Number of extensions: 122296 Number of successful extensions: 240 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 240 Number of HSP's gapped (non-prelim): 1 length of query: 127 length of database: 12,573,161 effective HSP length: 73 effective length of query: 54 effective length of database: 10,562,814 effective search space: 570391956 effective search space used: 570391956 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits) S2: 54 (25.8 bits)
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