GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001893-TA|BGIBMGA001893-PA|IPR004365|nucleic acid
binding, OB-fold, tRNA/helicase-type, IPR008994|Nucleic acid-binding,
OB-fold
         (127 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   1.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   4.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   4.3  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 17/100 (17%)

Query: 24  LQGTIEQTVGRDILIISDTFGRAKITKCETADGVIDKNSIKKGTYCCIIGTAVKTKGVPE 83
           L+G +E  V   I+  S+  GR K+    TA  +I + ++KKG   C++       G+  
Sbjct: 312 LKGDLEGLVEGVIIDCSNHIGRGKLV---TA--LIQRGTLKKG---CLL-----VSGIAS 358

Query: 84  VQAYKFIDLSSQPEMKSSWEIEVNEANLFLEGKLIPNIED 123
            +     + S  P +K+    + +E    L  K +PN+ D
Sbjct: 359 AKVRSMFNDSGNPILKA----KPSEVVQILGWKELPNVGD 394


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 78  TKGVPEVQAYKFIDLSSQPE 97
           TKG P ++    IDL   P+
Sbjct: 392 TKGKPLIRVENIIDLEGAPQ 411


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 15  NKPTPIDVWLQGTIEQTVGR 34
           N P+P+  W++   E+  GR
Sbjct: 255 NLPSPLYPWMRSQFERKRGR 274


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.138    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,808
Number of Sequences: 429
Number of extensions: 1331
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 127
length of database: 140,377
effective HSP length: 51
effective length of query: 76
effective length of database: 118,498
effective search space:  9005848
effective search space used:  9005848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)