GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001892-TA|BGIBMGA001892-PA|IPR000834|Peptidase M14,
carboxypeptidase A
         (298 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    62   9e-11
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    30   0.46 
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    29   1.1  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   2.5  
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom...    27   3.3  
SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          27   4.3  
SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharom...    27   4.3  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    26   7.5  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   9.9  
SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces pombe...    25   9.9  
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    25   9.9  

>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 62.1 bits (144), Expect = 9e-11
 Identities = 53/225 (23%), Positives = 101/225 (44%), Gaps = 16/225 (7%)

Query: 38  KPVIIIDAGQQGGKE-SVMLALYVIEQLVACNDNS----EMIEKVKWVVLPSTNPDGMEF 92
           K VIII  G    +   +    Y   QL+A  D+     ++++K +W+ +P  N DG E+
Sbjct: 238 KKVIIIQGGSHAREWIGIPSVCYAAWQLLAKYDSDGHVRKLLDKFEWIFIPVLNVDGYEY 297

Query: 93  ARYLMPYWKKNLKPLDDGPRLGVDISRNFDKEWN-SCPEVENKFSQIYPGAAAASENETI 151
                  W KN +PL++    G+++  N+   +N +     N++  + P    A+E   +
Sbjct: 298 TWSNDRLWSKNRQPLNNSECFGINLDANWAFGFNGNIDPCSNEYGGLSP--FQANETMAL 355

Query: 152 F--IQNALKKYQKNAKIYLSIRRDGHSIAYPYGYS-KTAPSNEAKLKRVASEIATRVNQK 208
           F  I  +L + QK    +L +     S+ +PY Y+    P +    + +A  +   +++ 
Sbjct: 356 FNLITESLSQEQKKVVGFLDVHSYSQSVLWPYAYTCDLFPPDTENFEELAIGLVKELHRV 415

Query: 209 TNGIYLFVNTSI-YELEGKQYC-GHSVD---YANDLGIPLCFEMR 248
            +  Y +    I Y+   K Y  G ++D   +A D+  P    +R
Sbjct: 416 NSRYYTYQQACIPYDGFHKHYLPGTAIDWVYFAADVAWPFNIRLR 460


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 7/87 (8%)

Query: 123 KEWNSCPEVENKFSQIYPGAAAASENETIFIQNALKKYQKNAKIYLSIRRDGHSIAYPYG 182
           K+ N+  + +NK   I PG    +   ++F   + K+Y  N   Y+   +D   I+Y   
Sbjct: 441 KKKNNKKKKKNKRKNIKPGPLGPAYVPSLFTPISFKQYFLNTSNYMDATKD-TEISYELL 499

Query: 183 Y-SKTAPSNEAKL-----KRVASEIAT 203
           Y SK +P N   L      R+A  IAT
Sbjct: 500 YTSKDSPYNMPDLTVPEYMRLAKRIAT 526


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 189 SNEAKLKRVAS-EIATRVNQKTNGIYLFVNTSIYELEG 225
           +N  +LKR+ S E+  ++    NGI  + N + +EL G
Sbjct: 2   TNPEQLKRILSHEVLLKIEMSKNGIVEYANPAFFELIG 39


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 160 YQKNAKIYLSIRRDGHSIAYPYGYSKTAPS 189
           Y++N+ +  S  R  HS+ YPY  S    S
Sbjct: 126 YRRNSPVKKSFSRPSHSLLYPYTSSNNMTS 155


>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 419

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 82  LPSTNPDGMEFARYLMPYWKKNLKPLDDGPRLGVDISRNFDKEWNSCPEVENKFSQIYPG 141
           + +T PD     +Y +      +K   DG  LG D  R+ ++    C  ++     I P 
Sbjct: 278 IKTTMPDDHSSFQYRLADIPGIIKGASDGKGLGYDFLRHVERAKMLCLVID-----INPK 332

Query: 142 AAAASENETIFIQNALKKYQKN 163
           A   ++     + + L KY+KN
Sbjct: 333 AKIPADQAFQLLWDELNKYEKN 354


>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 196 RVASEIATRVNQKTNGIYLFVNTSIYELEGKQ--YCGHSVDYANDLG-IPLCFEMRVFLE 252
           ++  ++ +R N    G  + +  S  E +GK      H +      G +   F    F +
Sbjct: 289 KIIEDVQSRANTFKRGATILMRDSATE-DGKHCVITDHKMIVREQFGDLSFTFPAGAFFQ 347

Query: 253 NNNKIISKF 261
           NNN I+ KF
Sbjct: 348 NNNSILEKF 356


>SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 15  EDASIGSSAVVINKEVEKAKEDLKPVII 42
           E+  I SS    ++E+EK KE++K V++
Sbjct: 114 ENLKIESSITFTSEEIEKEKENIKSVLL 141


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 172 RDGHSIAYPYG--YSKTAPSNEAKLKRVASEIATRVNQKTNGIYLFVNTSIYELE 224
           RD H I    G  Y +        L+     + TRV +  NG Y+F N     +E
Sbjct: 5   RDDHIIVIQTGSLYHRATFGLAESLEPPTIRVRTRVGKNDNGEYVFTNKEDINME 59


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 212 IYLFVNTSIYELEGKQYCGHSVDYANDLGIPLCFEMRVF-LENNNKIISK 260
           I LFV   I  L G   C +SV YA+   I L   +RVF L N  K   K
Sbjct: 168 ICLFVINHILILLGYFQCSYSVFYASVFYILLGVFIRVFYLVNKEKFEKK 217


>SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)

Query: 8   GDEASCIEDASIGSSAVVINKEVEKAKEDLKPVIIIDAGQQG 49
           G  ASC ++  I + A  IN    +A E+ K VII+     G
Sbjct: 103 GSTASCTKEEGINNLAECIN----RAHEETKSVIIVTENMAG 140


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)

Query: 125 WNSCPEVENKFSQIYPGAAAASENE 149
           W S  E      +  P AAAASENE
Sbjct: 232 WTSDAEYNQSAKEEAPAAAAASENE 256


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.135    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,473,139
Number of Sequences: 5004
Number of extensions: 65030
Number of successful extensions: 180
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 11
length of query: 298
length of database: 2,362,478
effective HSP length: 72
effective length of query: 226
effective length of database: 2,002,190
effective search space: 452494940
effective search space used: 452494940
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)