GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001892-TA|BGIBMGA001892-PA|IPR000834|Peptidase M14,
carboxypeptidase A
         (298 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0141 + 1017654-1017745,1018332-1018389,1018485-1018595,101...    36   0.052
01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873...    30   2.6  
06_03_0497 + 21424732-21424899,21424992-21425057,21425176-214256...    29   4.5  
09_02_0107 + 4354470-4354589,4355058-4355156,4355292-4355596,435...    29   6.0  
06_03_0160 + 17366392-17367525,17367856-17368206                       28   7.9  

>02_01_0141 +
           1017654-1017745,1018332-1018389,1018485-1018595,
           1018853-1018990,1019559-1019628,1019711-1019766,
           1020203-1020328,1020648-1020787,1020932-1021004,
           1021095-1021169,1021277-1021591
          Length = 417

 Score = 35.5 bits (78), Expect = 0.052
 Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 4/88 (4%)

Query: 114 GVDISRNFDKEWNSCPEVENKFSQIYPGAAAASENETIFIQNALKKYQKNAKIYLSIRRD 173
           GVD++RN+  +W    +  + + +  PG A  SE E   ++   K ++ +  +++++   
Sbjct: 159 GVDLNRNWSVDWGKKEKDYDPYEE-NPGTAPFSEPEAQIMRELSKSFKPH--MWVNVHSG 215

Query: 174 GHSIAYPYGYSKTAPSN-EAKLKRVASE 200
             ++  PY +  T P+   A L R   E
Sbjct: 216 MEALFMPYDHKNTTPNGASAHLMRTVLE 243


>01_06_1513 - 37884198-37884485,37884966-37886951,37886976-37887305,
            37887397-37887471,37887543-37887734,37887922-37888173,
            37888248-37888803,37888881-37889088,37889624-37889736,
            37890029-37890060,37890545-37890619
          Length = 1368

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/85 (20%), Positives = 38/85 (44%)

Query: 159  KYQKNAKIYLSIRRDGHSIAYPYGYSKTAPSNEAKLKRVASEIATRVNQKTNGIYLFVNT 218
            KY++ AK Y S+       A  +   KT  +    +    S ++  ++   +   +  N 
Sbjct: 1219 KYRQKAKWYGSLAEKNWQRALEFYGPKTHSTMFLNILMAQSALSVNLSDSFHSSVMLENA 1278

Query: 219  SIYELEGKQYCGHSVDYANDLGIPL 243
             ++ L+G+     + +Y+NDL + +
Sbjct: 1279 LVHLLDGRHVVEANDEYSNDLDLDI 1303


>06_03_0497 +
           21424732-21424899,21424992-21425057,21425176-21425634,
           21425945-21426088,21426172-21426306,21426418-21426808,
           21427256-21427428,21427508-21427615,21427715-21427810,
           21427896-21428003,21428644-21428792,21428924-21428925,
           21429071-21429207,21429538-21429842,21430922-21431099,
           21431192-21431305,21431373-21431504,21431610-21431843
          Length = 1032

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 180 PYGYSKTAPSNEAKLKRVASEIATRVNQKTNGIYLFVNTSIYELEGKQYCGHSVDYAN 237
           P G   T   N A  K++A++   + N+  N  Y F  TS+Y L+  +  G   DY N
Sbjct: 836 PRGVVDTYVLN-AYAKKIANDQNNKENEYRN-FYFFHRTSVYFLKNWEGAGKEEDYEN 891


>09_02_0107 +
           4354470-4354589,4355058-4355156,4355292-4355596,
           4356101-4356278,4356368-4356481,4356543-4356674,
           4356784-4356888
          Length = 350

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 180 PYGYSKTAPSNEAKLKRVASEIATRVNQKTNGIYLFVNTSIYELEGKQYCGHSVDYAN 237
           P G   T   N A  K++A++   + N+  N  Y F  TS+Y L+  +  G   DY N
Sbjct: 197 PRGVVDTYVLN-AYAKKIANDQNNKENEYRN-FYFFHRTSVYFLKNWEGTGKEEDYEN 252


>06_03_0160 + 17366392-17367525,17367856-17368206
          Length = 494

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/38 (36%), Positives = 17/38 (44%)

Query: 180 PYGYSKTAPSNEAKLKRVASEIATRVNQKTNGIYLFVN 217
           PYG        E  L R A E+  RV QKT  +   V+
Sbjct: 439 PYGIEHVRTLEELTLDRAAEELVGRVRQKTETVISHVH 476


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.135    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,786,900
Number of Sequences: 37544
Number of extensions: 362097
Number of successful extensions: 805
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 803
Number of HSP's gapped (non-prelim): 5
length of query: 298
length of database: 14,793,348
effective HSP length: 82
effective length of query: 216
effective length of database: 11,714,740
effective search space: 2530383840
effective search space used: 2530383840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)