GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001892-TA|BGIBMGA001892-PA|IPR000834|Peptidase M14,
carboxypeptidase A
         (298 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   5.7  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   5.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   10.0 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   10.0 

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 5   LLDGDEASCIEDASIGSSAVVINKEVEKAKEDLKPVI 41
           LL+G      +  +   + + I K ++KAKED+  VI
Sbjct: 142 LLEGHSIGIGDTIADPQTYLEIQKXIKKAKEDVIEVI 178


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/22 (36%), Positives = 16/22 (72%), Gaps = 2/22 (9%)

Query: 158 KKYQKNAKIYLSIRRDGHSIAY 179
           +KY+KN + YL I++  H++ +
Sbjct: 164 EKYEKNGETYLRIKK--HAVKF 183


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 146 SENETIFIQNALKKYQKNAKIYLSIRRDGHSIAYPYGYSKTAPSNEA 192
           S  ETI I N  +  Q+    + S+ RD  +    Y  S T    EA
Sbjct: 373 SNEETIDINNGAELMQETHVCFFSLLRDAFTSKGEYRMS-TGEMKEA 418


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 146 SENETIFIQNALKKYQKNAKIYLS 169
           S+N TI   + L   + NAKIY S
Sbjct: 510 SKNNTIVDISKLVNKRNNAKIYTS 533


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.135    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,999
Number of Sequences: 429
Number of extensions: 3620
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 4
length of query: 298
length of database: 140,377
effective HSP length: 57
effective length of query: 241
effective length of database: 115,924
effective search space: 27937684
effective search space used: 27937684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)