GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001892-TA|BGIBMGA001892-PA|IPR000834|Peptidase M14,
carboxypeptidase A
         (298 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42320.1 68418.m05150 zinc carboxypeptidase family protein co...    33   0.31 
At1g36160.1 68414.m04495 acetyl-CoA carboxylase 1 (ACC1) nearly ...    29   3.8  
At1g31230.1 68414.m03822 bifunctional aspartate kinase/homoserin...    29   5.0  
At5g08420.1 68418.m00992 expressed protein                             28   6.6  
At3g20370.1 68416.m02581 meprin and TRAF homology domain-contain...    28   6.6  
At1g26420.1 68414.m03222 FAD-binding domain-containing protein s...    28   6.6  
At1g18830.1 68414.m02345 transducin family protein / WD-40 repea...    28   6.6  

>At5g42320.1 68418.m05150 zinc carboxypeptidase family protein
           contains Pfam domain, PF00246: Zinc carboxypeptidase
          Length = 461

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 3/75 (4%)

Query: 114 GVDISRNFDKEWNSCPEVENKFSQIYPGAAAASENETIFIQNALKKYQKNAKIYLSIRRD 173
           GVD++RN+  +W    E +   S+  PG A  SE ET  ++     +  +  I++++   
Sbjct: 207 GVDLNRNWGVDWGK-KEKDYDPSEENPGTAPFSEPETQIMRKLAISFDPH--IWINVHSG 263

Query: 174 GHSIAYPYGYSKTAP 188
             ++  PY +    P
Sbjct: 264 MEALFMPYDHKNITP 278


>At1g36160.1 68414.m04495 acetyl-CoA carboxylase 1 (ACC1) nearly
           identical to acetyl-CoA carboxylase 1 (ACC1)
           [Arabidopsis thaliana] GI:11869927
          Length = 2247

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 20/64 (31%), Positives = 32/64 (50%)

Query: 23  AVVINKEVEKAKEDLKPVIIIDAGQQGGKESVMLALYVIEQLVACNDNSEMIEKVKWVVL 82
           A VI +  +  K+DL  ++ I    QG K    L L ++EQLV  N  +   + +++  L
Sbjct: 925 ADVIERMRQLYKKDLLKIVDIVLSHQGIKNKNKLVLRLMEQLVYPNPAAYRDKLIRFSTL 984

Query: 83  PSTN 86
             TN
Sbjct: 985 NHTN 988


>At1g31230.1 68414.m03822 bifunctional aspartate kinase/homoserine
           dehydrogenase / AK-HSDH nearly identical to gb|X71364
           [PIR|S46497] aspartate kinase / homoserine dehydrogenase
           from Arabidopsis thaliana;  contains ACT domain
          Length = 911

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 2/87 (2%)

Query: 206 NQKTNGIYLFVNTSIYELEGKQYCGHSVDYANDLGIPLCFEMRVFLENNNKIISKFHKMP 265
           N+K N   L     I +L+ K Y  +  +     G+P+   +R  LE  +KI+ +   + 
Sbjct: 667 NKKANSGPLDQYLKIRDLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDKIL-RIEGIF 725

Query: 266 RGFEASLRNGYFSGIRELYNVIVNQKK 292
            G  + L N  F G R    V+   K+
Sbjct: 726 SGTLSYLFNN-FVGTRSFSEVVAEAKQ 751


>At5g08420.1 68418.m00992 expressed protein
          Length = 391

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 105 KPLDDGPRLGVDISRNFDKEWNSCPEVE-NKFSQIYPGAAAASENET-IFIQNALKKYQK 162
           KP DD P +       FD  WN     E + FS ++P        E    +++ALK+Y  
Sbjct: 28  KPWDDDPNIDRWTIEKFDPAWNPTGMTETSTFSTLFPQYREKYLQECWPRVESALKEYGV 87

Query: 163 NAKIYL 168
             K+ L
Sbjct: 88  ACKLNL 93


>At3g20370.1 68416.m02581 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 379

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 224 EGKQYCGHSVDYANDLGIPLCFEM-RVFLENNNKIISKFHKMPRGFEASLRNGYFSGI 280
           +G  Y G   ++  D+ +P  +E   +F    N +  +F    RGF   L+N Y S +
Sbjct: 203 KGYLYDGDHCEFGVDVTMPSLYEKSELFSVTENFLNPRFTWTIRGFSTLLKNSYLSEV 260


>At1g26420.1 68414.m03222 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 529

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 195 KRVASEIATRVNQKTNGIYLFVNTSIYELEGKQY 228
           K V+   AT V  KTNGI L + +  ++LEG  Y
Sbjct: 84  KHVSHVQATVVCAKTNGIQLRIRSGGHDLEGLSY 117


>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
           family protein similar to Sec31p (GI:13928450)  {Oryza
           sativa}
          Length = 969

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 1/82 (1%)

Query: 127 SCPEVENKFSQIYPGAAAASENETIFIQNALKKYQKNAKIYLSIRRDGHSIAYPYGYSKT 186
           S P  E  F+      A  S + T F  N  ++  KNA  Y     D HS     G +  
Sbjct: 737 SNPYQEKSFTPAPLSNAQPSRSITFFPLNPPREL-KNADQYQQPTMDYHSFNRSAGPAYN 795

Query: 187 APSNEAKLKRVASEIATRVNQK 208
           AP      + + S++   +N K
Sbjct: 796 APPGPGSYRSIHSQVGPYINSK 817


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.135    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,380,921
Number of Sequences: 28952
Number of extensions: 313891
Number of successful extensions: 735
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 733
Number of HSP's gapped (non-prelim): 7
length of query: 298
length of database: 12,070,560
effective HSP length: 81
effective length of query: 217
effective length of database: 9,725,448
effective search space: 2110422216
effective search space used: 2110422216
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)