GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001891-TA|BGIBMGA001891-PA|IPR000834|Peptidase M14,
carboxypeptidase A, IPR009020|Proteinase inhibitor, propeptide
         (418 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   3.1  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    23   5.4  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   7.1  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   7.1  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    22   9.4  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   9.4  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   9.4  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 188 NDPEAKNDLNGVDWYIL---PVVNPDGYEYTRNSRNNRLWRKTRSKHANCYGVDGNRNY 243
           N PE +  LNG+  YI+   P    +   +  + R+N    K   K    Y   G  NY
Sbjct: 98  NSPEKRLTLNGIYEYIMRNFPYYRENKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNY 156


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 6/12 (50%), Positives = 12/12 (100%)

Query: 10  IEIIHLCSYTLI 21
           IE++++CSYT++
Sbjct: 175 IEVLYICSYTVL 186


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 14/32 (43%), Positives = 16/32 (50%)

Query: 93  SPERVPRRRLLRGLNVFEYNSHAAIQDYLDTV 124
           S ERV RRRL R L   +  S    QD   +V
Sbjct: 27  SSERVTRRRLRRPLKTTQSVSVTKDQDVSSSV 58


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 254 YNPCNKETYAGPEPFSEPETQIVRNIMMENAKR---MKLYVSIHSYGQYLVYP 303
           +NP +      P  F+        N ++  A+    +K+Y  +H YG   + P
Sbjct: 349 HNPMSHHLKQEPSGFTSSNHPFSINRLLPTAESKADIKMYADMHQYGYNTLSP 401


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 73  AQNTNLTYEIKRRNYGRSFESPERVPRRRLL 103
           AQ  N  +++ R NY    E   R P  R+L
Sbjct: 67  AQPLNELFDVTRDNYRHITELKRRFPGLRVL 97


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 207 VNPDGYEYTRNSRNNRLWRKTRSKHAN 233
           +N D  ++ R  RN+ L R+  S + N
Sbjct: 105 MNKDAVQHERGPRNSTLRRQQMSSYYN 131


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 207 VNPDGYEYTRNSRNNRLWRKTRSKHAN 233
           +N D  ++ R  RN+ L R+  S + N
Sbjct: 105 MNKDAVQHERGPRNSTLRRQQMSSYYN 131


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.138    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,860
Number of Sequences: 317
Number of extensions: 4447
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 7
length of query: 418
length of database: 114,650
effective HSP length: 58
effective length of query: 360
effective length of database: 96,264
effective search space: 34655040
effective search space used: 34655040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)