GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001891-TA|BGIBMGA001891-PA|IPR000834|Peptidase M14,
carboxypeptidase A, IPR009020|Proteinase inhibitor, propeptide
         (418 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42320.1 68418.m05150 zinc carboxypeptidase family protein co...    59   6e-09
At1g71696.2 68414.m08283 carboxypeptidase D, putative similar to...    43   4e-04
At1g71696.1 68414.m08284 carboxypeptidase D, putative similar to...    35   0.088
At4g14790.1 68417.m02274 ATP-dependent RNA helicase, mitochondri...    31   1.1  
At5g62570.1 68418.m07852 calmodulin-binding protein similar to c...    31   1.4  
At5g45980.1 68418.m05654 homeobox-leucine zipper protein-related...    31   1.4  
At2g28580.1 68415.m03472 hypothetical protein contains Pfam prof...    31   1.9  
At1g18460.1 68414.m02303 lipase family protein similar to triacy...    29   4.4  
At1g73920.2 68414.m08561 lipase family protein similar to lipase...    29   5.8  
At1g73920.1 68414.m08560 lipase family protein similar to lipase...    29   5.8  
At1g11170.2 68414.m01279 expressed protein contains Pfam profile...    29   7.6  
At1g11170.1 68414.m01280 expressed protein contains Pfam profile...    29   7.6  

>At5g42320.1 68418.m05150 zinc carboxypeptidase family protein
           contains Pfam domain, PF00246: Zinc carboxypeptidase
          Length = 461

 Score = 58.8 bits (136), Expect = 6e-09
 Identities = 51/213 (23%), Positives = 94/213 (44%), Gaps = 26/213 (12%)

Query: 108 VFEYNSHAAIQDYLDTVAKRHPDLVRLQVLGTSYQGRVMRLVKIS------TNPSAGNPI 161
           VF       + + + ++  RHPD + ++++ +  +G    +  ++       +    N  
Sbjct: 73  VFYVRCSDDLMEQIHSLVHRHPDKLSIELIKSGNKGYNAEVNVVTYCRGGKESDDRSNFR 132

Query: 162 IFIDAGIHAREWVAPAMALYVIHRLIND---PEA-----KNDLNGVDWYILPVVNPDGYE 213
           I +  G H RE +   +A  ++  L  +   P       KN L+ +   ++P+ NP+G  
Sbjct: 133 ILLTFGQHGRELITSELAFRILSILSEEQFLPNKNGGILKNTLDKLVIKMVPIENPNG-- 190

Query: 214 YTRNSRNNRLWRKTRSKHANCYGVDGNRNYGFKWAVSGVSYNPCNKETYAGPEPFSEPET 273
                   R+      +  N  GVD NRN+G  W      Y+P   E   G  PFSEPET
Sbjct: 191 ------RKRVESGDLCERRNGRGVDLNRNWGVDWGKKEKDYDP--SEENPGTAPFSEPET 242

Query: 274 QIVRNIMMENAKRMKLYVSIHSYGQYLVYPWGY 306
           QI+R + +       +++++HS  + L  P+ +
Sbjct: 243 QIMRKLAISFDPH--IWINVHSGMEALFMPYDH 273


>At1g71696.2 68414.m08283 carboxypeptidase D, putative similar to
           carboxypeptidase D [Anas platyrhynchos]
           gi|2789654|gb|AAB96915
          Length = 491

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 12/138 (8%)

Query: 91  FESPERVPRRRLLRGLNVFEYNSHAAIQDYLDTVAKRHPDLVRLQVLGTSYQGRVMRLVK 150
           F   E  P   L RG     Y ++  ++  +    KR   + RL  +G S  G  + +++
Sbjct: 50  FAQEEPTPSLELTRG-----YMTNDDLEKAMKDFTKRCSKISRLYSIGKSVNGFPLWVIE 104

Query: 151 ISTNPSA--GNPIIFIDAGIHAREWVAPAMAL----YVIHRLINDPEAKNDLNGVDWYIL 204
           IS  P      P       +H  E V   + L    ++      DP A+  +  V  +I+
Sbjct: 105 ISDRPGEIEAEPAFKYIGNVHGDEPVGRELLLRLANWICDNYKKDPLAQMIVENVHLHIM 164

Query: 205 PVVNPDGYEY-TRNSRNN 221
           P +NPDG+    RN+ NN
Sbjct: 165 PSLNPDGFSIRKRNNANN 182


>At1g71696.1 68414.m08284 carboxypeptidase D, putative similar to
           carboxypeptidase D [Anas platyrhynchos]
           gi|2789654|gb|AAB96915
          Length = 422

 Score = 35.1 bits (77), Expect = 0.088
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 7/98 (7%)

Query: 131 LVRLQVLGTSYQGRVMRLVKISTNPSA--GNPIIFIDAGIHAREWVAPAMAL----YVIH 184
           L R   +G S  G  + +++IS  P      P       +H  E V   + L    ++  
Sbjct: 16  LERAFSIGKSVNGFPLWVIEISDRPGEIEAEPAFKYIGNVHGDEPVGRELLLRLANWICD 75

Query: 185 RLINDPEAKNDLNGVDWYILPVVNPDGYEY-TRNSRNN 221
               DP A+  +  V  +I+P +NPDG+    RN+ NN
Sbjct: 76  NYKKDPLAQMIVENVHLHIMPSLNPDGFSIRKRNNANN 113


>At4g14790.1 68417.m02274 ATP-dependent RNA helicase, mitochondrial
           (SUV3) identical to mitochondrial RNA helicase
           [Arabidopsis thaliana] GI:5823579; contains Pfam profile
           PF00271: Helicase conserved C-terminal domain
          Length = 571

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 14  HLCSYTLIRLFPETTSQLENITRFEDVDNQVEILKQSRGINDSLDLIVPPNKLDYVQSY- 72
           HLCS     L PET +     TRF D  N  ++L  S  I   L+L +       +Q Y 
Sbjct: 276 HLCSVVYGSLPPETRTA--QATRFNDETNDFDVLVASDAIGMGLNLNISRIIFSTLQKYD 333

Query: 73  -AQNTNLTYEIKRRNYGRSFESPERVP 98
            ++  +LT    ++  GR+     + P
Sbjct: 334 GSETRDLTVSEIKQIAGRAGRFQSKFP 360


>At5g62570.1 68418.m07852 calmodulin-binding protein similar to
           calmodulin-binding protein TCB60 GI:1698548 from
           [Nicotiana tabacum]
          Length = 487

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 14/60 (23%), Positives = 32/60 (53%)

Query: 161 IIFIDAGIHAREWVAPAMALYVIHRLINDPEAKNDLNGVDWYILPVVNPDGYEYTRNSRN 220
           ++ IDA  H  E ++    + ++  ++N P ++  + G+D+  L + + DGY +  +  N
Sbjct: 339 VMVIDALSHLNEVISYDDEVSMMRNVLNAPASQGSVAGIDYSGLSLTSLDGYGFVSSLHN 398


>At5g45980.1 68418.m05654 homeobox-leucine zipper protein-related
           contains similarity to homeodomain transcription factor;
           contains weak hit to Pfam profile PF00046: Homeobox
           domain
          Length = 253

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 176 PAMALYVIHRLINDPEAKNDLNGVDWYILPVVNPDGYEY-TRNSRNNRLWRKTRSK--HA 232
           PA  L+ +H   NDP A     G   +++PVV  +G  + T N+  N    +   K    
Sbjct: 163 PAGFLFPVH---NDPSAAQSAFGFGDFVVPVVTEEGMAFSTVNNGVNLETNENFDKIPAI 219

Query: 233 NCYGVDGN 240
           N YG DGN
Sbjct: 220 NLYGGDGN 227


>At2g28580.1 68415.m03472 hypothetical protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 468

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 9/70 (12%)

Query: 2   LWLLLKDLIEIIHLCSYTLIRLFPETTSQLENITRFEDVDNQVEILKQSRGINDSL---D 58
           +W+  KD +E+I   S  ++  F +T S L N  + ED+     +  QSR IN +    D
Sbjct: 135 IWINTKDFVEMILHDSVFILLFFIQTGSTL-NFNKKEDI-----LFNQSRLINATAILED 188

Query: 59  LIVPPNKLDY 68
           LI+  N+L Y
Sbjct: 189 LILLENQLPY 198


>At1g18460.1 68414.m02303 lipase family protein similar to
           triacylglycerol lipase, gastric precursor (EC 3.1.1.3)
           {Canis familiaris} [SP|P80035]
          Length = 701

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 12/37 (32%), Positives = 25/37 (67%), Gaps = 3/37 (8%)

Query: 374 YEFVYPEPLLRKVLPQFY---EGFRVMGNQIRKEFSN 407
           Y F++  P+L +++P FY   + FR++ N++ ++F N
Sbjct: 487 YTFLFLGPVLSRIVPAFYIPTKFFRMLLNKLARDFHN 523


>At1g73920.2 68414.m08561 lipase family protein similar to lipase
           GB:CAA74737 [SP|O46108] from [Drosophila melanogaster]
          Length = 635

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)

Query: 374 YEFVYPEPLLRKVLPQFY---EGFRVMGNQIRKEFSN 407
           Y F++  P+L +++P FY     FR++ N++ ++F N
Sbjct: 420 YIFLFISPVLARIVPAFYIPTRFFRMLLNKLARDFHN 456


>At1g73920.1 68414.m08560 lipase family protein similar to lipase
           GB:CAA74737 [SP|O46108] from [Drosophila melanogaster]
          Length = 704

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)

Query: 374 YEFVYPEPLLRKVLPQFY---EGFRVMGNQIRKEFSN 407
           Y F++  P+L +++P FY     FR++ N++ ++F N
Sbjct: 489 YIFLFISPVLARIVPAFYIPTRFFRMLLNKLARDFHN 525


>At1g11170.2 68414.m01279 expressed protein contains Pfam profile
          PF05212: Protein of unknown function (DUF707)
          Length = 335

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 15 LCSYTLIRLFPETTSQLENITRFEDVDNQVEILKQSRGINDSL 57
          +C+  LI  +  T  Q E  T  E+ D   ++ K+S  +ND L
Sbjct: 41 MCTALLIFWYKTTNIQFEQ-TEIEETDYPFDMAKESEAVNDKL 82


>At1g11170.1 68414.m01280 expressed protein contains Pfam profile
          PF05212: Protein of unknown function (DUF707)
          Length = 438

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 15 LCSYTLIRLFPETTSQLENITRFEDVDNQVEILKQSRGINDSL 57
          +C+  LI  +  T  Q E  T  E+ D   ++ K+S  +ND L
Sbjct: 41 MCTALLIFWYKTTNIQFEQ-TEIEETDYPFDMAKESEAVNDKL 82


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.138    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,273,509
Number of Sequences: 28952
Number of extensions: 440729
Number of successful extensions: 901
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 894
Number of HSP's gapped (non-prelim): 13
length of query: 418
length of database: 12,070,560
effective HSP length: 83
effective length of query: 335
effective length of database: 9,667,544
effective search space: 3238627240
effective search space used: 3238627240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)