GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001890-TA|BGIBMGA001890-PA|IPR000834|Peptidase M14,
carboxypeptidase A
         (353 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0141 + 1017654-1017745,1018332-1018389,1018485-1018595,101...    33   0.46 
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     29   4.3  
02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41...    29   5.6  
04_04_1218 - 31822915-31823141,31823418-31823832,31824090-318244...    28   9.8  

>02_01_0141 +
           1017654-1017745,1018332-1018389,1018485-1018595,
           1018853-1018990,1019559-1019628,1019711-1019766,
           1020203-1020328,1020648-1020787,1020932-1021004,
           1021095-1021169,1021277-1021591
          Length = 417

 Score = 32.7 bits (71), Expect = 0.46
 Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 10/123 (8%)

Query: 106 LGINNLRCLINTKALA-ILLSYYFEHLDKFDIFFIPLANPDGYTFLGNSQHIWNKNIAPQ 164
           + +N L  L   + +A + LS + + L+   I  +P+ N +G       + +    +  +
Sbjct: 101 VALNLLYILTEKRKIAGVDLSSFEKILENLVIKVVPMENLNG------RKRVEEGELCDR 154

Query: 165 NDCPGVFLDRNFDVAWNVSSIN-SCSQLYPGEQPFSEVETRAIRGILHRYSHKIIAYFNV 223
            +  GV L+RN+ V W     +    +  PG  PFSE E + +R +    S K   + NV
Sbjct: 155 RNGRGVDLNRNWSVDWGKKEKDYDPYEENPGTAPFSEPEAQIMREL--SKSFKPHMWVNV 212

Query: 224 HVG 226
           H G
Sbjct: 213 HSG 215


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 7/62 (11%)

Query: 227  SINHRVIKGDAVLYPNGYTDVQIDDDKYFDL-------KAEIEEAMKNSSFQNAAVQVET 279
            SI+H+ +K D+ +  + Y++V  D+ +Y  L       KA+ +E MK+ +    A  V+ 
Sbjct: 5129 SIHHKGLKEDSSIEVDDYSEVCDDEYEYGQLPTLWPLMKAQFDELMKDKNKDECAYHVKL 5188

Query: 280  LQ 281
            +Q
Sbjct: 5189 IQ 5190


>02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-418153
          Length = 2177

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 36   QQILEIMSAFPNANVTYEV-IGRTASYNDILLLKVTELKRDIT 77
            Q I+E    FPN ++ YEV  G      D + ++VT L+RD+T
Sbjct: 2045 QDIIEFFKRFPNVDMAYEVREGDDIRAGDNVTVQVT-LERDMT 2086


>04_04_1218 - 31822915-31823141,31823418-31823832,31824090-31824440,
            31825391-31825549,31825965-31826093,31826257-31826460,
            31827200-31827412,31827547-31830912,31830999-31831150,
            31831912-31832407,31832646-31833456,31833537-31834728,
            31834856-31834922
          Length = 2593

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 82   ANKNKYVDEIPEKKVLFIVHGLNIL-----GINNLRCLINTKALA-ILLSYYFEHLDKFD 135
            A +NK+ D IPE+K + I+  L +L       +N   L  ++ L  +LLS Y   L + D
Sbjct: 1864 AKENKFQDCIPERKKVEIIRLLRVLYDIKSRQHNSSLLDESRELGFLLLSVYGATLSETD 1923

Query: 136  IFFIPLAN---PDGYTFLGNSQHIWNK 159
            +  + L N         + +  H+W K
Sbjct: 1924 LEILHLMNEIESSECKAITDVDHLWGK 1950


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.135    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,712,679
Number of Sequences: 37544
Number of extensions: 393044
Number of successful extensions: 812
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 812
Number of HSP's gapped (non-prelim): 4
length of query: 353
length of database: 14,793,348
effective HSP length: 83
effective length of query: 270
effective length of database: 11,677,196
effective search space: 3152842920
effective search space used: 3152842920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)