GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001890-TA|BGIBMGA001890-PA|IPR000834|Peptidase M14,
carboxypeptidase A
         (353 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    25   0.75 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    25   0.75 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   0.75 
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   4.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   5.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   5.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   5.3  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 25.4 bits (53), Expect = 0.75
 Identities = 9/41 (21%), Positives = 20/41 (48%)

Query: 245 TDVQIDDDKYFDLKAEIEEAMKNSSFQNAAVQVETLQNWYG 285
           T+    + ++ ++K E+   +K   +  AAV    +  W+G
Sbjct: 85  TEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHG 125


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 25.4 bits (53), Expect = 0.75
 Identities = 9/41 (21%), Positives = 20/41 (48%)

Query: 245 TDVQIDDDKYFDLKAEIEEAMKNSSFQNAAVQVETLQNWYG 285
           T+    + ++ ++K E+   +K   +  AAV    +  W+G
Sbjct: 101 TEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHG 141


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.75
 Identities = 9/41 (21%), Positives = 20/41 (48%)

Query: 245 TDVQIDDDKYFDLKAEIEEAMKNSSFQNAAVQVETLQNWYG 285
           T+    + ++ ++K E+   +K   +  AAV    +  W+G
Sbjct: 158 TEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHG 198


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 13  EDSTDTNLTKGITSQKLSPYTIKQQILEIMSAFP--NANVTYEVIGRTASYNDILLLKVT 70
           E S DT+L +G    +++   +++  LEI    P  +   T EV     +  D++L++ T
Sbjct: 112 ESSDDTSLFRGPKGIQINATELQKIKLEIHRDLPGKSTTTTVEVKRDIINPEDVILIRRT 171


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 285 GKISGTSVDYASTIYGIPFAMELVMQTYAN 314
           G+I+ T V Y    +G+P  +   + T  N
Sbjct: 249 GEIAWTKVIYVKRFFGLPVGVTAAIPTSEN 278


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 285 GKISGTSVDYASTIYGIPFAMELVMQTYAN 314
           G+I+ T V Y    +G+P  +   + T  N
Sbjct: 249 GEIAWTKVIYVKRFFGLPVGVTAAIPTSEN 278


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 285 GKISGTSVDYASTIYGIPFAMELVMQTYAN 314
           G+I+ T V Y    +G+P  +   + T  N
Sbjct: 249 GEIAWTKVIYVKRFFGLPVGVTAAIPTSEN 278


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,818
Number of Sequences: 429
Number of extensions: 4586
Number of successful extensions: 24
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 7
length of query: 353
length of database: 140,377
effective HSP length: 58
effective length of query: 295
effective length of database: 115,495
effective search space: 34071025
effective search space used: 34071025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)