GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001890-TA|BGIBMGA001890-PA|IPR000834|Peptidase M14,
carboxypeptidase A
         (353 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42320.1 68418.m05150 zinc carboxypeptidase family protein co...    43   3e-04
At3g50210.2 68416.m05490 2-oxoacid-dependent oxidase, putative s...    31   1.5  
At3g50210.1 68416.m05491 2-oxoacid-dependent oxidase, putative s...    31   1.5  
At1g47470.1 68414.m05266 hypothetical protein                          30   2.7  
At2g48110.1 68415.m06022 expressed protein                             28   8.2  

>At5g42320.1 68418.m05150 zinc carboxypeptidase family protein
           contains Pfam domain, PF00246: Zinc carboxypeptidase
          Length = 461

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 9/97 (9%)

Query: 131 LDKFDIFFIPLANPDGYTFLGNSQHIWNKNIAPQNDCPGVFLDRNFDVAWNVSSIN-SCS 189
           LDK  I  +P+ NP+G       + + + ++  + +  GV L+RN+ V W     +   S
Sbjct: 175 LDKLVIKMVPIENPNG------RKRVESGDLCERRNGRGVDLNRNWGVDWGKKEKDYDPS 228

Query: 190 QLYPGEQPFSEVETRAIRGILHRYSHKIIAYFNVHVG 226
           +  PG  PFSE ET+ +R +   +   I  + NVH G
Sbjct: 229 EENPGTAPFSEPETQIMRKLAISFDPHI--WINVHSG 263


>At3g50210.2 68416.m05490 2-oxoacid-dependent oxidase, putative
           strong similarity to partial cds of 2-oxoacid-dependent
           oxidase (din11) from GI:10834554 [Arabidopsis thaliana]
          Length = 250

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 160 NIAPQ-NDCPGVFLDRNFDVAWNVSSINSCSQLYPGEQPFSEVETRAIRG 208
           N +PQ   C   F + NFD    V  ++ C Q YPG +   +V  RA+ G
Sbjct: 190 NNSPQYRVCVAFFYETNFDAV--VEPLDICKQKYPGGRGGCQVFKRAVYG 237


>At3g50210.1 68416.m05491 2-oxoacid-dependent oxidase, putative
           strong similarity to partial cds of 2-oxoacid-dependent
           oxidase (din11) from GI:10834554 [Arabidopsis thaliana]
          Length = 332

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 160 NIAPQ-NDCPGVFLDRNFDVAWNVSSINSCSQLYPGEQPFSEVETRAIRG 208
           N +PQ   C   F + NFD    V  ++ C Q YPG +   +V  RA+ G
Sbjct: 272 NNSPQYRVCVAFFYETNFDAV--VEPLDICKQKYPGGRGGCQVFKRAVYG 319


>At1g47470.1 68414.m05266 hypothetical protein
          Length = 156

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 177 DVAWNVSSINSCSQLYPGEQPFSEVETRAI---RGILHRYSHK 216
           DVA + SS        PGE PF E ++ A+   R + H YSHK
Sbjct: 20  DVAISPSSKFDIYVEAPGEAPFEEADSPAMEYDRELAHHYSHK 62


>At2g48110.1 68415.m06022 expressed protein
          Length = 1295

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 7/113 (6%)

Query: 76  ITRYFRANKNKYVDEIPEKKV-LFIVHGLNILGINNLRCLINTKALAILLSYYFEHLDKF 134
           +T  F  N +    ++ EK + + IV  L +L + + R + N K        Y E L + 
Sbjct: 56  VTHIFWENHSPLSWKLLEKAISVNIVPPLLVLALLSPRVIPNRKLHPAAYRLYMELLKRH 115

Query: 135 DIFFIPLANPDGYTFLGNS----QHIWNKNIAPQNDCPG-VFLDRNFDVAWNV 182
              F+PL    GY    NS     H+ ++    Q+  PG + L   F + W +
Sbjct: 116 AFSFMPLIRAPGYHKTMNSIDDILHL-SETFGVQDQEPGSILLAFVFSIVWEL 167


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.135    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,355,936
Number of Sequences: 28952
Number of extensions: 351098
Number of successful extensions: 840
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 839
Number of HSP's gapped (non-prelim): 5
length of query: 353
length of database: 12,070,560
effective HSP length: 82
effective length of query: 271
effective length of database: 9,696,496
effective search space: 2627750416
effective search space used: 2627750416
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)