GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001889-TA|BGIBMGA001889-PA|undefined
         (112 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.24 
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    24   0.32 
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   0.55 
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   1.3  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   1.7  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   3.0  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    20   5.2  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    20   5.2  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    20   5.2  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    19   9.0  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    19   9.0  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    19   9.0  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 24.6 bits (51), Expect = 0.24
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 67  PVNEHVTNIVNRQPEISNPQPSISGMTSRTTTSP 100
           PV    + I+N QP+I++P  + +  +S  +  P
Sbjct: 408 PVPPMQSQIINPQPQITSPSNTNTSTSSTNSNKP 441



 Score = 22.6 bits (46), Expect = 0.97
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 79  QPEISNPQPSIS--GMTSRTTTSPLHNLRNLDD 109
           Q +I NPQP I+    T+ +T+S   N  N  D
Sbjct: 413 QSQIINPQPQITSPSNTNTSTSSTNSNKPNSSD 445


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 24.2 bits (50), Expect = 0.32
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 3/25 (12%)

Query: 6   LRDEDIEGF---WDIPSGSEDGQDF 27
           LRD   +G    W+ P GSED +++
Sbjct: 198 LRDRGFDGLDIDWEYPKGSEDKKNY 222


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.4 bits (48), Expect = 0.55
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 10  DIEGF---WDIPSGSEDGQDFSDAESDDDIEKVQSIRNFLSEPLSNVETSFSPQIYQFSS 66
           + +GF   W+ P  ++ G  FSD   D     V  +R    +   N E + +  I +F  
Sbjct: 136 EFDGFDLDWEYPGAADRGGSFSD--KDKFFYFVGELRRAFDKEGKNWEITMAVPIAKFRL 193

Query: 67  PVNEHVTNI 75
               HV  +
Sbjct: 194 QEGYHVPEL 202


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 54  ETSFSPQIYQ--FSSPVNEHVTNIVNRQPEISNPQPSIS 90
           E  F+P  Y     +P  +HV ++++    ++ P P IS
Sbjct: 504 EDLFAPNTYNRHLVAPNGDHVISLIDEISYMAPPAPLIS 542


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 86  QPSISGMTSRTTTSPLHNLRNLDDHRL 112
           Q  +SG+    T S + +L NLD+ +L
Sbjct: 462 QNDLSGVNLSETPSGISSLLNLDNQQL 488


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 54 ETSFSPQIYQFSSPVNEHVTNIVNRQPEISNPQPSISGMTSRT 96
          E + +P+I Q  S + +H ++       I+N Q   +   +RT
Sbjct: 54 EVNNTPEILQLMSDLKQHQSDDPVLSQIIANKQSGAAAPDART 96



 Score = 20.2 bits (40), Expect = 5.2
 Identities = 6/19 (31%), Positives = 9/19 (47%)

Query: 59  PQIYQFSSPVNEHVTNIVN 77
           P  YQ + PV   +  + N
Sbjct: 440 PNTYQIADPVTNEIKGVYN 458


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
          5-like protein protein.
          Length = 162

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 80 PEISNPQPSISGMTSRTTTS 99
          PE  NP+  +   T R+T S
Sbjct: 14 PECENPETELLVSTKRSTIS 33


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 7/23 (30%), Positives = 16/23 (69%)

Query: 43  RNFLSEPLSNVETSFSPQIYQFS 65
           +NF+ + +SN   +F  +IY+++
Sbjct: 281 KNFIVDHISNQFVAFRRKIYKWN 303


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 23  DGQDFSDAESDDDIEKVQSIRNFLSEPLSN 52
           +G+D  D + +DD  K   + N +   L N
Sbjct: 192 NGKDLDDDDMNDDDRKDDLLGNNMHHILGN 221


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query: 35  DIEKVQSIRNF 45
           D EK+ +IRNF
Sbjct: 516 DPEKISAIRNF 526


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 6/14 (42%), Positives = 10/14 (71%)

Query: 50  LSNVETSFSPQIYQ 63
           LSN+   ++P+ YQ
Sbjct: 509 LSNLANDYTPEYYQ 522


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 6/14 (42%), Positives = 10/14 (71%)

Query: 50  LSNVETSFSPQIYQ 63
           LSN+   ++P+ YQ
Sbjct: 457 LSNLANDYTPEYYQ 470


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.129    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,658
Number of Sequences: 317
Number of extensions: 1204
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of query: 112
length of database: 114,650
effective HSP length: 49
effective length of query: 63
effective length of database: 99,117
effective search space:  6244371
effective search space used:  6244371
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.0 bits)
S2: 38 (19.4 bits)