Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001889-TA|BGIBMGA001889-PA|undefined
(112 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 33 0.014
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 31 0.057
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 31 0.057
SPAC1782.05 |||phosphotyrosyl phosphatase activator homolog|Schi... 30 0.10
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 29 0.13
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 28 0.40
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 0.70
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 27 0.70
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 27 0.70
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo... 27 0.93
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 27 0.93
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 26 1.6
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 2.8
SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch... 25 3.8
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 25 3.8
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 25 3.8
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 25 3.8
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 24 5.0
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 24 5.0
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 24 5.0
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 24 5.0
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 24 5.0
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha... 24 6.6
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 24 6.6
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ... 24 6.6
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 24 6.6
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 24 6.6
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 24 6.6
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy... 24 6.6
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 23 8.7
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 23 8.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 23 8.7
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 23 8.7
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 23 8.7
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 23 8.7
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 32.7 bits (71), Expect = 0.014
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 8 DEDIEGFWDIPSGSEDGQDFSDAESDDDIEKVQSIRNFLSEPLSNVETSFSPQIYQFSSP 67
D + + IPSGS + + A S+ + + N +N E S IY +P
Sbjct: 80 DANFDQVSGIPSGSLEIPILNSATSNIRLTPSDTYNNIPVSDTNNEE--ISKNIY--GAP 135
Query: 68 VNEHVTNIVNRQPEISNPQPSISGMTSRTTTSP 100
+ E ++ + +S QPS+SG T+ SP
Sbjct: 136 ILESTSSDFQSKDSLSTTQPSVSGGNGSTSQSP 168
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 30.7 bits (66), Expect = 0.057
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 46 LSEPLSNVETSFSPQIYQFS-SPVNEHVTNIVNRQPEISNPQPSISGMTSRTTTSPLHNL 104
L E L + P ++Q S SP++ +++ P +++ PS+ S T SP +L
Sbjct: 47 LDEKLMSAFPGLEPHVFQHSQSPLSHKDASLLATMPSVASSNPSLISSGSSQTGSPSQSL 106
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 30.7 bits (66), Expect = 0.057
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 39 VQSIRNFLSEPLSNVETSFSPQIYQFSSPVNEHV----TNIVNRQPEISNPQPSISGMTS 94
V + ++++ S+ S P+ + SS ++E + TN + +PE S + SG+TS
Sbjct: 936 VSTASSYIASSASSNTLSTEPKTFSSSSTLSESISSINTNSLTVKPESSLSSSTTSGLTS 995
Query: 95 RTTTSP 100
++T P
Sbjct: 996 SSSTIP 1001
>SPAC1782.05 |||phosphotyrosyl phosphatase activator
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 29.9 bits (64), Expect = 0.10
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 23 DGQDFSDAESDDDIEKVQSIRNFLSEPLSNVETSFSPQIYQFSSPVNEHVTNIVNRQPEI 82
D +D + D + + S L E + + S S I Q SS EHV NI++R EI
Sbjct: 19 DNEDLKLFKEGDAYKLIDSFICDLDEAVKDKPISAS--IPQSSSI--EHVLNILDRVGEI 74
Query: 83 SNPQPSISGMTSR 95
P+I M SR
Sbjct: 75 KQENPAIDNMGSR 87
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 29.5 bits (63), Expect = 0.13
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 31 ESDDDIEKVQSIRNFLSEPLSNVETSFSPQIYQFSSPVNEHVTNIVNRQPEISNPQPSIS 90
E D++IE V S ++ +P S E + + S E V+ I +++P S +
Sbjct: 190 EDDEEIEDVASDKDEEEKPWSGDEEDDDELVVKDSEDETEGVSTIASQRPRRSARYVKLY 249
Query: 91 GMTSRTT 97
G T+ T+
Sbjct: 250 GSTTNTS 256
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 27.9 bits (59), Expect = 0.40
Identities = 16/64 (25%), Positives = 32/64 (50%)
Query: 31 ESDDDIEKVQSIRNFLSEPLSNVETSFSPQIYQFSSPVNEHVTNIVNRQPEISNPQPSIS 90
+ D++EK + L E ++++E++ S + SS ++ N PE+S P
Sbjct: 148 QKKDELEKSIQRCSELEEKINSLESAQSIEQEVISSLKDDKTVETKNDVPEVSRPSTDTI 207
Query: 91 GMTS 94
G++S
Sbjct: 208 GVSS 211
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 0.70
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 48 EPLSNVETSFSPQIYQFSSPVNEHVTNIVNRQPEISNPQPSISGM 92
+P+ T PQ+ F P+ T + P+ + QP + GM
Sbjct: 538 QPMMPQRTGMQPQMTGFQQPMAPQRTGMQPMMPQRTGMQPQMPGM 582
Score = 24.2 bits (50), Expect = 5.0
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 48 EPLSNVETSFSPQIYQFSSPVNEHVTNIVNRQPEISNPQPSISGM 92
+P+ T PQ+ P+ T + P+ + QP + GM
Sbjct: 615 QPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMMPQRTGMQPQMPGM 659
Score = 24.2 bits (50), Expect = 5.0
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 48 EPLSNVETSFSPQIYQFSSPVNEHVTNIVNRQPEISNPQPSISGM 92
+P+ T PQ+ P+ T + P+ + QP + GM
Sbjct: 681 QPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMMPQRTGMQPQMPGM 725
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 27.1 bits (57), Expect = 0.70
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 49 PLSNVETSFSPQ---IYQFSSPVNEHVTNIVNRQPEISNPQPSISGMTSRTTTSPL 101
PLS+ ET + + + +N++ + I N P+I +PS S SR+ S L
Sbjct: 217 PLSDYETDDMDDGTPLQRHVATLNQYQSPIFNLGPDILEDEPSYSSRASRSRQSSL 272
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 27.1 bits (57), Expect = 0.70
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 25 QDFSDAESDDDIEKVQSIRNFLSEPLSNVETS 56
+ F D ++++ + +QSI NF+ + L + ETS
Sbjct: 142 EHFLDKKTEETVAFIQSIDNFVEKILRHAETS 173
Score = 25.4 bits (53), Expect = 2.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 23 DGQDFSDAESDDDIEKVQSIRNFLSEPLSN 52
D +DFSD+E +D + R F E S+
Sbjct: 801 DREDFSDSEEEDGNDSSDDDRGFAEEEYSD 830
>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 568
Score = 26.6 bits (56), Expect = 0.93
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 57 FSPQIYQFSSPVNEHVTNIVNRQPEISNPQPSISGMTSRTTTSPLHNLRN 106
F P++ +F + +N+ +S+ +P I+ T LH LRN
Sbjct: 341 FIPEL-EFPDNARKRALKYLNQSNSVSSSEPIITKFNIPITLKDLHTLRN 389
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 26.6 bits (56), Expect = 0.93
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 56 SFSPQIYQFSSPVNEHVTNIVNRQPEISNP--QPSISGMTSRTTT 98
S PQ QFS P N++++ + + +++P PS S + R T
Sbjct: 242 SHQPQSTQFSPPANDNISKLPSSFTIVNDPLKSPSSSRLRIRNIT 286
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 25.8 bits (54), Expect = 1.6
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 15 WDIPSGSEDGQDFSDAESDDDI---------EKVQSIRNFLS--EPLSNVETSFSPQIYQ 63
W P+ S D + F+D DD+ E I N L + L N SF Q+Y
Sbjct: 392 WREPAESLDKEFFNDEGEIDDVFHNYFHNSNENGDLITNSLHGLDFLENANESFPEQMYP 451
Query: 64 FSSPVNEHVTNIVNRQPEISNPQ 86
F ++++N + P PQ
Sbjct: 452 FIKHNKDYISNHPDEVPPDGLPQ 474
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 25.0 bits (52), Expect = 2.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 29 DAESDDDIEKVQSIRNFLSEPLSNVETSFSP 59
+ ESD ++ + N + P N ETS SP
Sbjct: 84 EKESDTQTRYLKQLINICNSPSKNHETSLSP 114
>SPCC1259.06 |||transcription factor TFIID complex subunit 8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 222
Score = 24.6 bits (51), Expect = 3.8
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 44 NFLSEPLSNVETSFSPQIYQFSSPVNEHVTNIVNRQPEISNPQPSISGMTSRTTTSPLHN 103
N L+ P+S+++T + +N+ + + N +I P S + S+ + L +
Sbjct: 62 NLLNIPMSSLQTELEKYLKPLPPAINDELDRLANESQDI--PSKFKSSLDSKMVSQLLGS 119
Query: 104 L 104
L
Sbjct: 120 L 120
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 24.6 bits (51), Expect = 3.8
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 38 KVQSIRNFLSEPLSNVETSFSPQIYQFSSPVNEHVTNIVNRQPEISNPQPSISGMTSRTT 97
K Q + + + LS V+ F P+ PV N+ ++P ++ + SR
Sbjct: 825 KSQGQKLTVGKALSEVKRRF-PEGITLLDPVE----NMNIKEPTFIKLMKKVNILESRLL 879
Query: 98 TSPLHNLRNLDD 109
++PLHN L++
Sbjct: 880 SNPLHNFSELEE 891
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 24.6 bits (51), Expect = 3.8
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 25 QDFSDAESDDDIEKVQSIRNFLSEPLSNVETSFSPQIYQFSSPVNEHVTN-IVNRQPEIS 83
QD E + ++E SI L NVE + + ++ PV + VT+ I+N +I+
Sbjct: 299 QDNGKEEPEKEVESTPSILQNFKVSLVNVE-NVPNEPFKRQDPVIKAVTSEIMNVFKDIA 357
Query: 84 NPQP 87
N P
Sbjct: 358 NVSP 361
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 24.6 bits (51), Expect = 3.8
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 17 IPSGSEDGQDFSDAESDDDIEKVQSIRN 44
+ + +++G+D D E DD+I++ N
Sbjct: 184 LKAANDEGEDVKDNEQDDNIDESDPFAN 211
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 24.2 bits (50), Expect = 5.0
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 22 EDGQDFSDAESDDDI-EKVQSIRNFLSEPLSN 52
E QD S++E +DDI E V S N ++ ++
Sbjct: 190 ESSQDESESEEEDDITEPVPSFANISTQDFNS 221
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 24.2 bits (50), Expect = 5.0
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 39 VQSIRNFLSEPLSNVETSFSPQIYQFSSPVNEHVTNIVN 77
+QS+ N S ++++ SF P + ++ V+ + + N
Sbjct: 374 IQSVANGTSSTKTHLDVSFQPMLKEYEEKVHNLLRKLGN 412
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 24.2 bits (50), Expect = 5.0
Identities = 9/50 (18%), Positives = 22/50 (44%)
Query: 22 EDGQDFSDAESDDDIEKVQSIRNFLSEPLSNVETSFSPQIYQFSSPVNEH 71
+D D + ++DD + + N++ P S++ + + P+ H
Sbjct: 45 DDVLDLYNDTTEDDADDADDVNNYIMSPSSSLSSESEHALDALVYPIYSH 94
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 24.2 bits (50), Expect = 5.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 29 DAESDDDIEKVQSIRNFLSE 48
DA D+ IE+ IRN LSE
Sbjct: 1077 DANQDNYIEECMKIRNVLSE 1096
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 24.2 bits (50), Expect = 5.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 66 SPVNEHVTNIVNRQPEISNPQPSISGMTSRT 96
+P NE + + P S PQPS + S T
Sbjct: 217 APSNEDQRTMESTSPTDSQPQPSAPNLVSST 247
>SPBC1711.04 |||methylenetetrahydrofolate reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 320
Score = 23.8 bits (49), Expect = 6.6
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 81 EISNPQPSISGMTSRTTTSPLHNLRNLDDHR 111
++ +P + G+ + + HN+R+LD +
Sbjct: 114 QVVSPDKDVEGLCHKYVMNMYHNIRHLDPEK 144
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 23.8 bits (49), Expect = 6.6
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 43 RNFLSEPLSNVETSFSPQIYQFSSPVNE------HVTNIVNRQPEISNPQPSISGMTSRT 96
R+ LS L + SP+I P ++ HV + N++ P+ MTS +
Sbjct: 184 RSVLSSLLGEMSNHCSPKIVLSLRPQDKIPDFITHVLELKNKKITYQGPKEQYIPMTSHS 243
Query: 97 TTSPL 101
T P+
Sbjct: 244 TNIPV 248
>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 23.8 bits (49), Expect = 6.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 10 DIEGFWDIPSGSEDGQDFSDAESDDDIEKVQS 41
D+E DI + G+DFSD E+ E+ +S
Sbjct: 567 DLEDNSDIDESANAGKDFSDDENIGSDEEDES 598
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 23.8 bits (49), Expect = 6.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 19 SGSEDGQDFSDAESDDDIEKVQSIRNFLSEPLSN 52
S S DG + S A +D +QS+++ +S+ L+N
Sbjct: 254 SQSIDGDNVSKAFINDQSLALQSLKSVISKELTN 287
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 23.8 bits (49), Expect = 6.6
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 27 FSDAESDDDIEKVQSIRNFLS--EPLSNVETSFSPQIYQFSSPVNEHVTNIVNRQPEISN 84
F S D KV+ I + + NVE S P+ + + +H N+ EIS+
Sbjct: 115 FKAITSKGDTLKVKKIPEYAEAFDTTKNVEVSSFPEKSMNENVLIQHSLNLAPSDKEISS 174
Query: 85 PQPS 88
+ S
Sbjct: 175 TEES 178
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 23.8 bits (49), Expect = 6.6
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 33 DDDIEKVQS--IRNFLSEPLSNVETSFSPQIYQFSSPVNEHVTNIV-NRQPEISN 84
D +EK+ + I F +S ETSF +F+S N + N++ Q ++SN
Sbjct: 718 DLSLEKLPTLEINTFNCPAISYFETSFDECFSKFASSDNYIIGNLLKTNQEDLSN 772
>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 538
Score = 23.8 bits (49), Expect = 6.6
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 69 NEHVTNIVNRQPEISNPQPSISGMTSRTTTS 99
N+ ++VN P I + ISG+ S T+++
Sbjct: 172 NQVTNSVVNEHPLIPHSTSQISGVHSNTSSN 202
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 23.4 bits (48), Expect = 8.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 85 PQPSISGMTSRTTTSPLHN 103
PQP S T +TTS HN
Sbjct: 167 PQPISSSSTYNSTTSSYHN 185
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 23.4 bits (48), Expect = 8.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 80 PEISNPQPSISGMTSRTTTSPLHNLRNLDDHR 111
P++++P S T +TTS NL +D R
Sbjct: 123 PQLNSPSHSYEPTTFPSTTSITENLPTIDPTR 154
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 23.4 bits (48), Expect = 8.7
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 47 SEPLSNVETSFSPQIYQFSSPVNEHVTNIVNRQPEISNPQPSISGMTSRTTT 98
S +S +S + F+S + +N+ +S P P+ S ++ TT+
Sbjct: 654 STSISTSSSSTATSSTSFASESSSFYSNVTTSSSTVSTPPPTTSFPSTFTTS 705
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 23.4 bits (48), Expect = 8.7
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 42 IRNFLSEPLSNVETSFSPQIYQFSSPVNEHVTNIVNRQPEIS 83
+R F E L+ + Q Y SS E ++++ PE S
Sbjct: 462 LRIFPREMLTRIPKKILDQYYSRSSAYTESSKDVIDNTPESS 503
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 23.4 bits (48), Expect = 8.7
Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 28 SDAESDDDIEKVQSIRNFLSEPLSNVETSFSPQIYQFSSPVNEHVTNIVNRQPEISNPQP 87
+ A D ++KV + F S+ +V + + + + + I N ++SNP+
Sbjct: 1655 NSANFDVKLKKVVAETEFRSKAKISV---YEKKTRDLQNKITQLEETIENLNKQLSNPEK 1711
Query: 88 SISGMTSRTTTSPL 101
+ +S T T P+
Sbjct: 1712 TDESTSSVTETKPV 1725
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 23.4 bits (48), Expect = 8.7
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 45 FLSEPLSNVETSFSPQIYQFSSPVNEHVTNIVNRQPEISNPQPSISG 91
++ E LS+++ + S V + N V+ +SN PSI+G
Sbjct: 2033 WIEENLSDLKFLLEKSLENESVGVQSAIGNFVSTILTLSNTHPSIAG 2079
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.311 0.129 0.367
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 598,540
Number of Sequences: 5004
Number of extensions: 26670
Number of successful extensions: 100
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 64
Number of HSP's gapped (non-prelim): 42
length of query: 112
length of database: 2,362,478
effective HSP length: 64
effective length of query: 48
effective length of database: 2,042,222
effective search space: 98026656
effective search space used: 98026656
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 48 (23.4 bits)
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