GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001889-TA|BGIBMGA001889-PA|undefined
         (112 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   1.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   3.5  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   4.6  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           21   4.6  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   4.6  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 22  EDGQDFSDAESDDDIE 37
           ED  D  D + DDD+E
Sbjct: 391 EDDDDDGDDDDDDDVE 406


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 58  SPQIYQFSSPVNEHVTNIVNRQPEISNPQPSISGMTSRTTTSPLHNL 104
           S  IY+  +  NE++  + N+  +I+N   + + +  R   +P++ L
Sbjct: 361 SSNIYERQN--NEYIWIVSNKYQKIANGDLNFNEVNFRILNAPVNQL 405


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 9/46 (19%), Positives = 23/46 (50%)

Query: 31  ESDDDIEKVQSIRNFLSEPLSNVETSFSPQIYQFSSPVNEHVTNIV 76
           ++++ +EK + +  F+  P  NV+       Y+ +  + E + N +
Sbjct: 244 QTENSLEKAKQVGAFMGCPTRNVKEMIRCLRYRPARAIVETLANFM 289


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 9/46 (19%), Positives = 23/46 (50%)

Query: 31  ESDDDIEKVQSIRNFLSEPLSNVETSFSPQIYQFSSPVNEHVTNIV 76
           ++++ +EK + +  F+  P  NV+       Y+ +  + E + N +
Sbjct: 115 QTENSLEKAKQVGAFMGCPTRNVKEMIRCLRYRPARAIVETLANFM 160


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 9/46 (19%), Positives = 23/46 (50%)

Query: 31  ESDDDIEKVQSIRNFLSEPLSNVETSFSPQIYQFSSPVNEHVTNIV 76
           ++++ +EK + +  F+  P  NV+       Y+ +  + E + N +
Sbjct: 244 QTENSLEKAKQVGAFMGCPTRNVKEMIRCLRYRPARAIVETLANFM 289


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.129    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,816
Number of Sequences: 429
Number of extensions: 1565
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 112
length of database: 140,377
effective HSP length: 50
effective length of query: 62
effective length of database: 118,927
effective search space:  7373474
effective search space used:  7373474
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.4 bits)
S2: 39 (19.8 bits)