Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001889-TA|BGIBMGA001889-PA|undefined
(112 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57260.1 68416.m06374 glycosyl hydrolase family 17 protein si... 35 0.014
At5g03420.1 68418.m00295 dentin sialophosphoprotein-related cont... 32 0.10
At3g50690.1 68416.m05546 leucine-rich repeat family protein 31 0.13
At5g40450.1 68418.m04905 expressed protein 31 0.18
At1g19680.1 68414.m02453 expressed protein 31 0.23
At3g59040.2 68416.m06580 pentatricopeptide (PPR) repeat-containi... 30 0.41
At3g59040.1 68416.m06581 pentatricopeptide (PPR) repeat-containi... 30 0.41
At3g20490.1 68416.m02595 expressed protein 30 0.41
At5g01280.1 68418.m00037 expressed protein 29 0.54
At5g50915.2 68418.m06314 basic helix-loop-helix (bHLH) family pr... 29 0.71
At5g50915.1 68418.m06313 basic helix-loop-helix (bHLH) family pr... 29 0.71
At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar ... 29 0.94
At5g47380.1 68418.m05839 expressed protein contains Pfam profile... 28 1.2
At3g44920.1 68416.m04839 cation/hydrogen exchanger, putative (CH... 28 1.2
At1g55440.1 68414.m06341 DC1 domain-containing protein contains ... 28 1.2
At4g30080.1 68417.m04278 transcriptional factor B3 family protei... 28 1.6
At3g44930.1 68416.m04840 cation/hydrogen exchanger, putative (CH... 27 2.2
At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1... 27 2.2
At1g75150.1 68414.m08729 expressed protein ; expression supporte... 27 2.2
At5g06970.1 68418.m00789 expressed protein 27 2.9
At3g56150.1 68416.m06241 eukaryotic translation initiation facto... 27 2.9
At1g06660.1 68414.m00706 expressed protein 27 2.9
At5g48600.1 68418.m06011 structural maintenance of chromosomes (... 27 3.8
At5g10380.1 68418.m01204 zinc finger (C3HC4-type RING finger) fa... 27 3.8
At1g73860.1 68414.m08552 kinesin motor protein-related similar t... 27 3.8
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 27 3.8
At1g23280.1 68414.m02912 MAK16 protein-related contains similari... 27 3.8
At1g13160.1 68414.m01526 SDA1 family protein contains Pfam PF052... 27 3.8
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 26 5.0
At4g31430.2 68417.m04465 expressed protein 26 5.0
At4g31430.1 68417.m04464 expressed protein 26 5.0
At1g21380.1 68414.m02675 VHS domain-containing protein / GAT dom... 26 5.0
At5g63550.1 68418.m07976 expressed protein 26 6.6
At5g52910.1 68418.m06566 timeless family protein contains Pfam d... 26 6.6
At5g13860.1 68418.m01620 tumour susceptibility gene 101 (TSG101)... 26 6.6
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 26 6.6
At3g26840.1 68416.m03357 esterase/lipase/thioesterase family pro... 26 6.6
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 26 6.6
At2g34750.1 68415.m04267 RNA polymerase I specific transcription... 26 6.6
At2g17110.1 68415.m01974 expressed protein 26 6.6
At1g10720.1 68414.m01221 BSD domain-containing protein contains ... 26 6.6
At5g65490.1 68418.m08236 expressed protein similar to unknown pr... 25 8.8
At5g28520.1 68418.m03472 jacalin lectin family protein similar t... 25 8.8
At5g13990.1 68418.m01636 exocyst subunit EXO70 family protein co... 25 8.8
At5g13540.2 68418.m01564 expressed protein HERC2 - Homo sapiens,... 25 8.8
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso... 25 8.8
At4g28760.2 68417.m04113 expressed protein predicted protein. Ar... 25 8.8
At4g28760.1 68417.m04112 expressed protein predicted protein. Ar... 25 8.8
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 25 8.8
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 25 8.8
At2g34100.1 68415.m04175 expressed protein similar to the Asp-r... 25 8.8
At2g19390.1 68415.m02262 expressed protein 25 8.8
At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein ... 25 8.8
At1g60640.1 68414.m06826 expressed protein 25 8.8
At1g50600.1 68414.m05683 scarecrow-like transcription factor 5 (... 25 8.8
At1g33220.1 68414.m04104 beta-1,3-glucanase, putative similar to... 25 8.8
>At3g57260.1 68416.m06374 glycosyl hydrolase family 17 protein
similar to glucan endo-1,3-beta-glucosidase, acidic
isoform precursor SP:P33157 from [Arabidopsis thaliana]
Length = 339
Score = 34.7 bits (76), Expect = 0.014
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
Query: 2 SLRRLRDEDIEGFWDIPSGSEDGQDFSDAESDDDI-EKVQSIRNFLSEPLSNVETSFSPQ 60
+L LR DIE D+PS + S E+D + E VQS R+ + NV P
Sbjct: 70 ALAALRGSDIELILDVPSSDLERLASSQTEADKWVQENVQSYRDGVRFRYINVGNEVKPS 129
Query: 61 IYQFSSPVNEHVTNIVNRQPEISNPQPSISGMTSRTTTSPLHNLRNLDDHR 111
+ F +++ N V+ +I+ T+ T TSP R D+++
Sbjct: 130 VGGFLLQAMQNIENAVSGAGLEVKVSTAIATDTT-TDTSPPSQGRFRDEYK 179
>At5g03420.1 68418.m00295 dentin sialophosphoprotein-related
contains weak similarity to Swiss-Prot:Q9NZW4 dentin
sialophosphoprotein precursor [Homo sapiens]
Length = 583
Score = 31.9 bits (69), Expect = 0.10
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 25 QDFSDAESDDDIEKVQSIRNFLSEPLSNVETSFSPQIYQFSSPVNEHVTN-IVNRQPEIS 83
QD D S DIE ++ E +++V+ FS ++SP + H T+ +N +
Sbjct: 224 QDLYDTSSCPDIE-AGNVSMTEDEEVNDVDKDFSLTFDHYTSPTSNHYTSPDLNSIKHVD 282
Query: 84 NPQPSISGMTSRTTTSPLHNLRN--LDD 109
S +TS T + + N +N +DD
Sbjct: 283 IATGSSYDLTSENTMTNVENFQNQQIDD 310
>At3g50690.1 68416.m05546 leucine-rich repeat family protein
Length = 447
Score = 31.5 bits (68), Expect = 0.13
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 8 DEDIEG-FWDIPSGSEDGQDFSDAESDDDIEKVQSIRNFLSEPLSNVETSFSPQIYQFSS 66
DED +G + G ED +F+D + D + E +S +L +P+S VE +
Sbjct: 339 DEDGDGETGEDDQGVEDDGEFADEDDDVEEEDEESGEGYLVQPVSQVED--HDAVGNDIE 396
Query: 67 PVNEHVTNIVNRQPEISNPQPSISGMTSRTTTSPLHNLRNLDD 109
P+NE N + + E+ + P I + +++ P + DD
Sbjct: 397 PINE--DNDPDEEEEVEDDLP-IPDQSLASSSRPKRKRDDDDD 436
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 31.1 bits (67), Expect = 0.18
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 8 DEDIEGFWDIPSGSEDGQDFSDAESDDDIEK--VQSIRNFLSEPLSNVETSFSPQIYQFS 65
DE IE PS +G+ +AE+ ++I++ + + + L V+T SP FS
Sbjct: 1014 DEVIEVLSASPSKELEGETVVEAENIENIKENEEEQAAEKIQKSLETVQTVESPSSLLFS 1073
Query: 66 SPVNEHVT 73
S +HVT
Sbjct: 1074 SEEQDHVT 1081
>At1g19680.1 68414.m02453 expressed protein
Length = 444
Score = 30.7 bits (66), Expect = 0.23
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Query: 18 PSGSEDGQDFSDAESDDDIEKVQSIRNFLSEPLSNVETSF-SPQIYQFSSPVNEHVTNIV 76
P SE G + S + + ++ PL+ + SP +SPV V NIV
Sbjct: 68 PPSSETG-GLATLGSQKSADSEMGTASMVTAPLAGTSLAIRSPSDVSLASPVRVEVKNIV 126
Query: 77 NRQPEISN--PQPSISGMTSRTTTSPLHNL 104
+ +S+ P PS S S ++ H+L
Sbjct: 127 DSSDIVSSVLPNPSSSTSVSDLPSAHTHSL 156
>At3g59040.2 68416.m06580 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 590
Score = 29.9 bits (64), Expect = 0.41
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 8 DEDIEGFWDIPSGSEDGQDFSDAESDDDIEKV 39
D+D EG DI S S D +D D + DD E V
Sbjct: 536 DDDEEGVEDISSESSDDEDEGDDDDDDARETV 567
>At3g59040.1 68416.m06581 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 583
Score = 29.9 bits (64), Expect = 0.41
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 8 DEDIEGFWDIPSGSEDGQDFSDAESDDDIEKV 39
D+D EG DI S S D +D D + DD E V
Sbjct: 529 DDDEEGVEDISSESSDDEDEGDDDDDDARETV 560
>At3g20490.1 68416.m02595 expressed protein
Length = 458
Score = 29.9 bits (64), Expect = 0.41
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 22 EDGQDFSDAESDDDIEKVQSIRNFLSEPLSNVETSFSPQIYQFSSPVNEHVTNIVNRQPE 81
+D + + + DDDIE+ S +F ++ ++ + FS SS V H + +++ QP
Sbjct: 81 KDDRSVAVEDRDDDIEEFSSPEDFPTDAPASTRSHFS----SCSSRVPLHGSGVLSNQPS 136
Query: 82 IS 83
IS
Sbjct: 137 IS 138
>At5g01280.1 68418.m00037 expressed protein
Length = 460
Score = 29.5 bits (63), Expect = 0.54
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 40 QSIRNFLSEPLSNVETSFSPQIYQFSSPVNEHVTNIVNRQPEISNPQPSISGMTSRTTTS 99
+++ N L+ P N+ T S ++ +S +EH T ++ +S + S +SR+T+
Sbjct: 38 RNVTNHLNAPDDNLMTLIS-RLENYSKEESEHQTTSLHSSSSVSGIRRPSSSSSSRSTSR 96
Query: 100 P 100
P
Sbjct: 97 P 97
>At5g50915.2 68418.m06314 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 286
Score = 29.1 bits (62), Expect = 0.71
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 33 DDDIEKVQSIRNFLSEPLSNVETSFSPQIYQFSSPVNEHVTNIVNRQPEISNPQPSISGM 92
D+ I VQ+++ + E LS TS SP +Y F S ++ + Q E+ +P+ S
Sbjct: 183 DEIINYVQTLQTQV-EFLSMKLTSISPVVYDFGSDLDGLIL-----QSEMGSPEVGTSFT 236
Query: 93 TSRTTTSPL 101
+ TT+P+
Sbjct: 237 NAMPTTTPI 245
>At5g50915.1 68418.m06313 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 286
Score = 29.1 bits (62), Expect = 0.71
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 33 DDDIEKVQSIRNFLSEPLSNVETSFSPQIYQFSSPVNEHVTNIVNRQPEISNPQPSISGM 92
D+ I VQ+++ + E LS TS SP +Y F S ++ + Q E+ +P+ S
Sbjct: 183 DEIINYVQTLQTQV-EFLSMKLTSISPVVYDFGSDLDGLIL-----QSEMGSPEVGTSFT 236
Query: 93 TSRTTTSPL 101
+ TT+P+
Sbjct: 237 NAMPTTTPI 245
>At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 315
Score = 28.7 bits (61), Expect = 0.94
Identities = 20/80 (25%), Positives = 34/80 (42%)
Query: 17 IPSGSEDGQDFSDAESDDDIEKVQSIRNFLSEPLSNVETSFSPQIYQFSSPVNEHVTNIV 76
I GSE QDF + + + ++S RN + + V Q + +NE
Sbjct: 72 IIEGSETVQDFVQMQLQEIQDNIRSRRNKIFLLMEEVRRLRVQQRIKSVKAINEDSELEA 131
Query: 77 NRQPEISNPQPSISGMTSRT 96
PEI++ P + +T +T
Sbjct: 132 TEMPEITSSIPFLPNVTPKT 151
>At5g47380.1 68418.m05839 expressed protein contains Pfam profile
PF04784: Protein of unknown function, DUF547
Length = 618
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 36 IEKVQSIRNFLSEPLSNVETSFSPQIYQFSSPVNEHVTNIVNRQPEISN 84
+++ +S+R L + +S SP F+ NE +T I + E++N
Sbjct: 103 LQQEKSMRMVLERAMGRASSSLSPGHRHFAGQANELITEIELLEAEVTN 151
>At3g44920.1 68416.m04839 cation/hydrogen exchanger, putative
(CHX11) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 671
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 3 LRRLRDEDIEGFWDIPSGSEDGQDFSDAESDDDIEKVQSIRNFLSEPLSNVE 54
+R + D +IE WD +E +D ES++DI + I + E + V+
Sbjct: 558 IRLIFDHEIESEWDYILDNEGLKDLKSTESNEDILYTERIVTSVVEVVKAVQ 609
>At1g55440.1 68414.m06341 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 653
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 13 GFWDIPSGSEDGQDFSDAESDD 34
G+WD SGSE D D++ DD
Sbjct: 88 GWWDGSSGSEGSTDDDDSDDDD 109
>At4g30080.1 68417.m04278 transcriptional factor B3 family protein
contains Pfam profile: PF02362 B3 DNA binding domain
Length = 670
Score = 27.9 bits (59), Expect = 1.6
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 31 ESDDDIEKVQSIRNFLSEPLSNVE----TSFSPQIYQFSSPVNEHVTNIVNRQPEISNP 85
+ D ++ V+ + +L E +SNV TSFSP + P + N++N P S P
Sbjct: 366 DEPDLLQNVKRVNPWLVELVSNVHPIPLTSFSPPRKKMRLPQHPDYNNLINSIPVPSFP 424
>At3g44930.1 68416.m04840 cation/hydrogen exchanger, putative
(CHX10) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 731
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 3 LRRLRDEDIEGFWDIPSGSEDGQDFSDAESDDDIEKVQSI 42
+R + D +IE WD +E +D E + DI+ ++ I
Sbjct: 618 IRLVFDHEIESDWDYILDNEGLKDLKSTEDNKDIDYIERI 657
>At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain
Length = 847
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 28 SDAESDDDIEKVQSIRNFLS 47
SD+ES+DD E ++SI++ LS
Sbjct: 99 SDSESEDDFEMIRSIKSQLS 118
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 18 PSGSEDGQDFSDAESDDDIEKVQSIRNFLS 47
P G G+ SD+E++DD E +++I++ L+
Sbjct: 51 PEGVGGGEIPSDSENEDDFEMLRTIKSQLA 80
>At1g75150.1 68414.m08729 expressed protein ; expression supported
by MPSS
Length = 753
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 20 GSEDGQDFSDAESDDDIEKVQSIRNFLSEPLSNVETSFSPQIYQFSSPVNE 70
G + G + SD+E+ D+I ++ + +P F +++F SP+ E
Sbjct: 106 GEKSGSEISDSETRDEIRVSETTESEKEDP------DFETTVHEFDSPMEE 150
>At5g06970.1 68418.m00789 expressed protein
Length = 1101
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 15 WDIPSGSE-DGQDFSDAESDDDIEKVQSIRNFLSEPLSNVETSFSPQIYQFSSPVNE 70
+D P E D D E DDD+++V + R +S +N P++ F++ + +
Sbjct: 143 FDSPKAQELTVDDIDDFEDDDDLDEVGNFR--ISRRTANDAADLVPRLPSFATGITD 197
>At3g56150.1 68416.m06241 eukaryotic translation initiation factor 3
subunit 8 / eIF3 p110 / eIF3c / p105 (TIF3C1) nearly
identical to SP|O49160 Eukaryotic translation initiation
factor 3 subunit 8 (eIF3 p110) (eIF3c) (p105)
{Arabidopsis thaliana}
Length = 900
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 5 RLRDEDIEGFWDIPSGSEDGQDFSDAESDDDIEKVQ 40
+L ++DI + + P E+ Q D + DDD ++V+
Sbjct: 153 KLYEDDINKYREAPEVEEEKQPEDDDDDDDDDDEVE 188
>At1g06660.1 68414.m00706 expressed protein
Length = 481
Score = 27.1 bits (57), Expect = 2.9
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 21 SEDGQDFSD---AESDDDIEKVQSIRNFLSEPLSNVETSFSPQIYQFSSPVNEHVTNIVN 77
S +G D+ + AE+ + + E LS E SFSP + Q +NE++ +
Sbjct: 315 SHEGLDYEEQIEAETPSSETYGEKVEESSDEKLSKFEASFSPWLNQ----INENIAALNE 370
Query: 78 RQPEI 82
R P +
Sbjct: 371 RTPGV 375
>At5g48600.1 68418.m06011 structural maintenance of chromosomes
(SMC) family protein similar to SP|P50532 Chromosome
assembly protein XCAP-C {Xenopus laevis}; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1241
Score = 26.6 bits (56), Expect = 3.8
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 24 GQDFSDAESDDDIEKVQSIRNFLSEPLSNVETSFSPQIYQFSSPVNEHVTNIVNRQPEIS 83
G + A+S +IE + S N+L + L+++E + P+ + + E I + EI
Sbjct: 758 GLEMELAKSQREIESLNSEHNYLEKQLASLEAASQPKTDEIDR-LKELKKIISKEEKEIE 816
Query: 84 NPQPSISGMTSRTTTS 99
N + + + T+
Sbjct: 817 NLEKGSKQLKDKLQTN 832
>At5g10380.1 68418.m01204 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 301
Score = 26.6 bits (56), Expect = 3.8
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 17 IPSGSEDGQDFSDAESDDDIEKVQSIRNFLS--EPLSNVETSFSPQIYQFSSPVNEHVTN 74
+P D ++ + +++ + SI LS + ++N S FS+ +
Sbjct: 222 LPRAQSDLANYCGSGRVENVRRSFSIGGSLSLCDGINNATRSGRQFYTSFSANLFSSSRR 281
Query: 75 IVNRQPEISNPQPSISGMTS 94
+ N QP N PS++G TS
Sbjct: 282 VRNEQPIPQNQMPSVTGNTS 301
>At1g73860.1 68414.m08552 kinesin motor protein-related similar to
kinesin-C GB:AAF04841 from [Strongylocentrotus
purpuratus]
Length = 1030
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 74 NIVNRQPEISNPQPSISGMTSRTTTSPLHNLRNL 107
++ R P IS+ S++ +S + T PL LR +
Sbjct: 954 DVTKRPPRISDRAKSVTAKSSTSVTRPLDKLRKV 987
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 19 SGSEDGQDFSDAESDDDIEKVQSIRNFLSEPLSNVETSFSPQIYQFSS 66
+GS +G F + ES D +KV ++ F P+ N + F FS+
Sbjct: 142 NGSSEGYGFVEFESHDVADKV--LQEFNGAPMPNTDQPFRLNWASFST 187
>At1g23280.1 68414.m02912 MAK16 protein-related contains similarity
to MAK16 protein SP:P10962 from [Saccharomyces
cerevisiae]
Length = 303
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 8 DEDIEGFWDIPSGSE--DGQDF-SDAESDDDIEK 38
+ED+E F +PS +G D SD E DDD E+
Sbjct: 224 EEDMEDFSGLPSKESYLEGDDHDSDDEDDDDAEE 257
>At1g13160.1 68414.m01526 SDA1 family protein contains Pfam PF05285:
SDA1 domain; similar to mystery 45A
(GI:16797816){Drosophila melanogaster}
Length = 804
Score = 26.6 bits (56), Expect = 3.8
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 23 DGQDFSDAESDDDIEKVQSIRNFLSEPLSNVETSFSPQIYQFSSPVNEHVTNIVNRQPEI 82
D D SDAESDDD E + + + + N + + SS + + I
Sbjct: 252 DDDDDSDAESDDDEESKK-----IDQVVINRQAVYKANNKGTSSSKKKKQAKLQRAVKSI 306
Query: 83 SNPQPSISGMTSRTTTSPLHNLRN 106
Q S S T+ +T SPL++L +
Sbjct: 307 KRKQRSSSENTT-STFSPLNHLND 329
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 59 PQIYQFSSPVNEHVTNIVNRQPEISNPQPSISGMTSRTTTSPLHNLRN 106
PQ+ F P T I+N IS +I G+ + LH LRN
Sbjct: 2153 PQLETFVQPPT--ATGILNALLAISGGHENIKGIFLNVSEGELHELRN 2198
>At4g31430.2 68417.m04465 expressed protein
Length = 574
Score = 26.2 bits (55), Expect = 5.0
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 14 FWDIPSGSEDGQDFS-DAESDDDIEKVQSIRNFLSEPLSNVETSFSPQIYQFSS 66
F D S SE+ +D S D + D+D+EK + +F E L + + P I + SS
Sbjct: 75 FSDSSSSSEEDEDSSSDIDGDEDVEK--NNPDFTEEDLLSAQ---QPSIQRLSS 123
>At4g31430.1 68417.m04464 expressed protein
Length = 485
Score = 26.2 bits (55), Expect = 5.0
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 14 FWDIPSGSEDGQDFS-DAESDDDIEKVQSIRNFLSEPLSNVETSFSPQIYQFSS 66
F D S SE+ +D S D + D+D+EK + +F E L + + P I + SS
Sbjct: 75 FSDSSSSSEEDEDSSSDIDGDEDVEK--NNPDFTEEDLLSAQ---QPSIQRLSS 123
>At1g21380.1 68414.m02675 VHS domain-containing protein / GAT
domain-containing protein weak similarity to Hrs [Rattus
norvegicus] GI:8547026; contains Pfam profiles PF00790:
VHS domain, PF03127: GAT domain
Length = 506
Score = 26.2 bits (55), Expect = 5.0
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 40 QSIRNFLSEPLSN--VETSFSPQIYQFSSPVNEHVTNIVNRQPEISNPQPSISGMTSRTT 97
QS + S P+ + V S SP+ F+ PV + + E P+ M++RT
Sbjct: 363 QSSNHDYSAPIFDEPVPQSKSPEHALFTKPVYDQTEQLPPAPWETQEPRKYPPSMSARTN 422
Query: 98 TSPLHNLRNLDDH 110
P + N+ H
Sbjct: 423 KRPEYFQHNVPQH 435
>At5g63550.1 68418.m07976 expressed protein
Length = 530
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 16 DIPSGSEDGQDFSDAESD 33
D+PS +E+G+D DA+S+
Sbjct: 283 DLPSDTEEGKDEGDADSE 300
>At5g52910.1 68418.m06566 timeless family protein contains Pfam
domains PF05029: Timeless protein C terminal region and
PF04821: Timeless protein
Length = 1141
Score = 25.8 bits (54), Expect = 6.6
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 16 DIPSGSEDGQDFSDAESDDDIEKVQSIRNFLSEPLSNVETSFSPQIYQF--SSP--VNEH 71
D+ SGS+D D + + D+++ + F+S SN + +F S+P N H
Sbjct: 627 DLSSGSDDSSDGEEQTATDEVD--FKVSTFISAFASNSIIQNLCWLLKFYKSNPKQTNHH 684
Query: 72 VTNIVNRQPE 81
V +I+ R E
Sbjct: 685 VISILRRITE 694
>At5g13860.1 68418.m01620 tumour susceptibility gene 101 (TSG101)
family protein similar to SP|Q99816 Tumor
susceptibility gene 101 protein {Homo sapiens};
contains Pfam profile PF05743: Tumour susceptibility
gene 101 protein (TSG101)
Length = 368
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 38 KVQSIRNFLSEPLSNVETSFSPQIYQFSSPVNEHVTNIVN 77
K+Q I FLS L+ S P S + +H+ N+++
Sbjct: 7 KMQEIHQFLSSALTQRGPSALPYAENTKSLIRQHLLNLIS 46
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 13 GFWDIPSGSEDGQDFSDAESDDDIEKVQSIRNFLS 47
GF D S + +D D E +D E V S+ + LS
Sbjct: 915 GFLDQVSDVDSDEDDVDGEDGEDDEDVNSVSDLLS 949
>At3g26840.1 68416.m03357 esterase/lipase/thioesterase family
protein contains Pfam profile PF03096: Ndr family
Length = 701
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 87 PSISGMTSRTTTSPLHNLRNLDDHRL 112
PS+SG+++ ++S L L + +HRL
Sbjct: 7 PSVSGLSAVASSSNLRRLTSASNHRL 32
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 21 SEDGQDFSDAESDDDIEKVQSIRNFLSEPLSNVETS 56
SEDG SD + +D++K N E S E S
Sbjct: 179 SEDGGKESDTSNSEDVQKESDTSNSEDESASESEES 214
>At2g34750.1 68415.m04267 RNA polymerase I specific transcription
initiation factor RRN3 family protein contains Pfam
PF05327: RNA polymerase I specific transcription
initiation factor RRN3; similar to RRN3 (GI:7670100)
[Homo sapiens] similar to RNA polymerase I specific
transcription initiation factor RRN3 (Swiss-Prot:P36070)
[Saccharomyces cerevisiae]
Length = 613
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 1 MSLRRLRDEDIEGFWDIPSGSEDGQDFSDAESDDDIE 37
M + RLRD D+E WD + + D E +D E
Sbjct: 228 MVMERLRDLDLEIEWDDIPQDDSSRGMFDMELEDAAE 264
>At2g17110.1 68415.m01974 expressed protein
Length = 733
Score = 25.8 bits (54), Expect = 6.6
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 16 DIPSGSEDGQDFSDAESDDDIEKVQS--IRNFLSEPLSNVETSFSPQIYQFSSPVNEHVT 73
D SG D SD++ DDDI+ + S + + L + SN + S+ Y +S + +
Sbjct: 76 DSGSGHLDFDSDSDSDDDDDIDSLHSSPLHHHLEDDDSNPK-SYLHMNYMKNSYMPPSL- 133
Query: 74 NIVNRQPEISNPQPSISGMTSRTTTS 99
+ ++P S+PQ G +S ++TS
Sbjct: 134 -VYEQRP--SSPQRVHFGESSSSSTS 156
>At1g10720.1 68414.m01221 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 429
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 8 DEDIEGFW-DIPSGSEDGQDFSDAESDDDIEKV 39
+ED W + + +ED FSD E DDDI +
Sbjct: 381 EEDSANSWAPMFTVNEDDVSFSDLEGDDDISSL 413
>At5g65490.1 68418.m08236 expressed protein similar to unknown
protein (dbj BAA75199.1)
Length = 643
Score = 25.4 bits (53), Expect = 8.8
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 11/75 (14%)
Query: 7 RDEDIEGFWDIPSGSEDGQDFSDAESDDDIEK---------VQSIRNFLSEPLSN--VET 55
RDE + D GS DF D E D + E+ +S ++E L N +E
Sbjct: 510 RDEQADDDSDGSEGSSMDMDFDDVEDDSEGEESNEDAKESFEESYYGAMNEELKNSTLEK 569
Query: 56 SFSPQIYQFSSPVNE 70
SF Q SS NE
Sbjct: 570 SFENVNQQHSSKQNE 584
>At5g28520.1 68418.m03472 jacalin lectin family protein similar to
myrosinase-binding protein homolog [Arabidopsis
thaliana] GI:2997767; contains Pfam profile PF01419
jacalin-like lectin domain
Length = 451
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 11 IEGFWDIPSGSEDG 24
+EGFWD SG+E G
Sbjct: 379 VEGFWDKTSGNERG 392
>At5g13990.1 68418.m01636 exocyst subunit EXO70 family protein
contains Pfam domain PF03081: Exo70 exocyst complex
subunit;
Length = 695
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 16 DIPSGSEDGQDFSDAESDDDIEKVQSIRNFLSEPLSNVET 55
D G E G SDA DD I N + + N ET
Sbjct: 12 DKSKGDEKGDVVSDAHPSDDAHHQDGISNENVDVVGNAET 51
>At5g13540.2 68418.m01564 expressed protein HERC2 - Homo sapiens,
EMBL:AF071172; isoform contains non-consensus GG
acceptor splice site at intron 6
Length = 788
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 26 DFSDAESDDDIEKVQSIRNFLSEPL 50
D SD E DD + V+S +F +EPL
Sbjct: 252 DPSDMEKIDDFKHVKSFDSFNTEPL 276
>At4g37820.1 68417.m05351 expressed protein Kaposi's
sarcoma-associated herpes-like virus ORF73gene, Kaposi's
sarcoma-associated herpesvirus, U52064
Length = 532
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/76 (21%), Positives = 34/76 (44%)
Query: 19 SGSEDGQDFSDAESDDDIEKVQSIRNFLSEPLSNVETSFSPQIYQFSSPVNEHVTNIVNR 78
S E G D S+ E++DD K +S + + E + + Q S+ H ++ +
Sbjct: 451 SKRESGNDTSNKETEDDSSKTESEKKEENNRNGETEETQNEQEQTKSALEISHTQDVKDA 510
Query: 79 QPEISNPQPSISGMTS 94
+ ++ + +G+ S
Sbjct: 511 RTDLETLPETSNGLIS 526
>At4g28760.2 68417.m04113 expressed protein predicted protein.
Arabidopsis thaliana
Length = 924
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 67 PVNEHVTNIVNRQPEISNPQPSISGMTSRTTTSP 100
PV+ +I+ + E++ P+P +G TS P
Sbjct: 640 PVSSEQQSIILGEEEVTTPKPLATGNTSENQDQP 673
>At4g28760.1 68417.m04112 expressed protein predicted protein.
Arabidopsis thaliana
Length = 924
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 67 PVNEHVTNIVNRQPEISNPQPSISGMTSRTTTSP 100
PV+ +I+ + E++ P+P +G TS P
Sbjct: 640 PVSSEQQSIILGEEEVTTPKPLATGNTSENQDQP 673
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 18 PSGSEDGQDFSDAESDDDIEKVQSIRNFLSEPLSN 52
P S+D D SD++S+D+ E Q I SE +N
Sbjct: 29 PPSSDDSGD-SDSDSEDEAESNQQIVTLESELSAN 62
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 18 PSGSEDGQDFSDAESDDDIEKVQSIRNFLSEPLSN 52
P S+D D SD++S+D+ E Q I SE +N
Sbjct: 29 PPSSDDSGD-SDSDSEDEAESNQQIVTLESELSAN 62
>At2g34100.1 68415.m04175 expressed protein similar to the Asp-rich
region of GP|1633572|U52064
Length = 345
Score = 25.4 bits (53), Expect = 8.8
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 1 MSLRRLRDEDIEGFWDIPSGSEDGQDFSDAESDDDIEKVQSIRNFLSEPLSNVE----TS 56
+S +ED + D+ SED D + + DD+ E+ + SE +S ++ T+
Sbjct: 170 LSFDEEEEEDNDDEEDVDIFSEDSDDSWNEDFDDEDEEADTTVFKYSENMSELDLGSATN 229
Query: 57 FSPQIY 62
++P Y
Sbjct: 230 YTPSSY 235
>At2g19390.1 68415.m02262 expressed protein
Length = 1211
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 51 SNVETSFSPQIYQFSSPVNEHVTNIVNRQPEISNPQPSISGMTSRTTTSP 100
S + SP ++ SP+ ++ N+ P +S MTS ++SP
Sbjct: 406 SGLPPKLSPGLHNTPSPIEWDISGCTNKPPTLSGVTQR-KRMTSNRSSSP 454
>At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein
weak similarity to Nucleoporin NUP42 (Nuclear pore
protein NUP42) (Swiss-Prot:P49686) [Saccharomyces
cerevisiae]; contains Pfam profile PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 435
Score = 25.4 bits (53), Expect = 8.8
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
Query: 25 QDFSDAESDDDIEKVQSIRNFLSEPLSNVETSFSPQIYQFSSPVNEHVTNIVNRQPEISN 84
Q + E + K+ NFL P T+ SP +I + +I++
Sbjct: 165 QSIVERERNLQNSKIAEFENFLRNPYKGSVTANQ-------SPFAATTPSIFPQSSQINS 217
Query: 85 PQPSISGMTSRTTTS 99
P P+ SG +T S
Sbjct: 218 PSPAFSGFNQQTAFS 232
>At1g60640.1 68414.m06826 expressed protein
Length = 340
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 22 EDGQDFSDAESDDDIEKVQSIRNFLSEPLSNVETSF 57
+DG D SDA+ + S+ FL EP E ++
Sbjct: 68 DDGDDNSDADDYGGTLEKMSMNRFLEEPPEEEEENY 103
>At1g50600.1 68414.m05683 scarecrow-like transcription factor 5
(SCL5) similar to SCARECROW GB:AAB06318 GI:1497987 from
[Arabidopsis thaliana]
Length = 597
Score = 25.4 bits (53), Expect = 8.8
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 51 SNVETSFSPQIYQFSSPVNEHVTNIVNRQPEISNPQPSISGMTSRTT 97
S+ TSFS S N +++ N PE +N P +SG ++ T
Sbjct: 128 SSSTTSFSSNESPISQANNNNLSRFNNHSPEENNNSP-LSGSSATNT 173
>At1g33220.1 68414.m04104 beta-1,3-glucanase, putative similar to
plant beta-1,3-glucanase bg4 GI:2808438 from
[Arabidopsis thaliana]
Length = 335
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 50 LSNVETSFSPQIYQFSSPVNEHVTNIVNRQPEISNP 85
+SN+E S+ P +F+S E + ++ + S P
Sbjct: 164 MSNLEQSYPPSAGEFTSQAREQLVPVLKLLSQTSTP 199
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.311 0.129 0.367
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,002,535
Number of Sequences: 28952
Number of extensions: 128650
Number of successful extensions: 508
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 474
Number of HSP's gapped (non-prelim): 61
length of query: 112
length of database: 12,070,560
effective HSP length: 72
effective length of query: 40
effective length of database: 9,986,016
effective search space: 399440640
effective search space used: 399440640
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 53 (25.4 bits)
- SilkBase 1999-2023 -