GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001886-TA|BGIBMGA001886-PA|IPR007259|Spc97/Spc98
         (486 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48377| Best HMM Match : Spc97_Spc98 (HMM E-Value=8.3e-26)           55   1e-07
SB_37303| Best HMM Match : Spc97_Spc98 (HMM E-Value=0)                 45   1e-04
SB_36861| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.39 
SB_36139| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.1  
SB_11434| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.8  
SB_44837| Best HMM Match : 7tm_1 (HMM E-Value=0.068)                   29   6.3  
SB_37314| Best HMM Match : Mlp (HMM E-Value=2)                         29   6.3  
SB_55438| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_48946| Best HMM Match : RVT_1 (HMM E-Value=1.49939e-43)             29   8.4  
SB_32387| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.4  
SB_15964| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-15)         29   8.4  
SB_15148| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-15)         29   8.4  

>SB_48377| Best HMM Match : Spc97_Spc98 (HMM E-Value=8.3e-26)
          Length = 495

 Score = 54.8 bits (126), Expect = 1e-07
 Identities = 65/276 (23%), Positives = 105/276 (38%), Gaps = 54/276 (19%)

Query: 2   GCQILSLIHQYILSGNKSIHDAVLKIFTSVNKVFIHQLCTWLLYGELKDVYQEFFISK-- 59
           GC++L +++Q  + G   + DA+ +I    + V   QL  WLL+G L D + EF ISK  
Sbjct: 127 GCKLLDILYQSCICGVPDVKDALERILFMCHGVLYQQLSAWLLHGLLIDRHDEFLISKVS 186

Query: 60  --------RKDDXXXXXXXXXXXXNVCDKTLV----STE----TLGCGYTLNPTLIPHFM 103
                   ++ +             V  + L     S E     +   Y +N  ++P ++
Sbjct: 187 AADENESIKRTESMSQSNSDLGIPGVTRRQLAEIMESEEKQPIAIQQHYKINADMLPSYI 246

Query: 104 PLSLAQEILFIGKTVILFDLDPKKVKKHSGFASSRPMLPLKKYGIESRRFTIWEDKESEF 163
           P  +A++ILF+G +V +F  +  K  K+     S                 I  D E  F
Sbjct: 247 PTRVAEKILFVGDSVKMF--EEAKNGKNVNITES-----------------IIHDNEEMF 287

Query: 164 HEKLQKLKDPDNFEVHNLRSVIREIKECVTKHLWTVAVEEAQLIHELKLMKDFYXXXXXX 223
              L  L+    F V    S I +I+ CV                  +++KDF+      
Sbjct: 288 LRSLHMLRQLPRFNVTAFESEIDKIRACVA-----------------EVVKDFFLLGRGE 330

Query: 224 XXXXXXXXTAHMLDKPTIRTSSRDMNQAFQMAARSV 259
                     ++L  P    +S D N AFQ     V
Sbjct: 331 LFSSFIEKAENLLKVPPSGKTSHDTNAAFQQVIHKV 366



 Score = 48.4 bits (110), Expect = 1e-05
 Identities = 20/42 (47%), Positives = 30/42 (71%)

Query: 372 QADVLETNFSRLMDAVNKTNDFEKLKKAHATFLADILSQSFL 413
           + DVLE  FS+L+D +N T DFE ++ AH  F+  +++QSFL
Sbjct: 365 KVDVLEAQFSQLLDKINITQDFEAIRLAHDHFITTLMAQSFL 406


>SB_37303| Best HMM Match : Spc97_Spc98 (HMM E-Value=0)
          Length = 661

 Score = 45.2 bits (102), Expect = 1e-04
 Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 19/117 (16%)

Query: 2   GCQILSLIHQYILSGNKSIHDAVLKIFTSVNKVFIHQLCTWLLYGELKDVYQEFFISKRK 61
           G  +LS IH Y+  G+  +   V  +   V +     L  W+  GEL+D YQEFFI    
Sbjct: 330 GGALLSAIHTYMQHGDPFVRSLVKHMLNLVARPIRTILDRWVYEGELEDQYQEFFIE--- 386

Query: 62  DDXXXXXXXXXXXXNVCDKTLVSTETLGCGYTLNPTLIPHFMPLSLAQEILFIGKTV 118
                            D T+         Y+L   ++P F+P+ +A +IL IGK++
Sbjct: 387 ----------------VDYTVRDERLWFDKYSLRKQMLPSFIPIDMATKILNIGKSI 427


>SB_36861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 791

 Score = 33.5 bits (73), Expect = 0.39
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 356 LHNKLMFLMDNLQHYMQADVLETNFSRLMDAVNKTNDFEKLKKAHATFLADILSQSFLT 414
           L  +++  +   +HYM  +VLE N+  +  A+ +  + + + + H  FL   L    LT
Sbjct: 544 LRQRMLHFVQTFEHYMMFEVLEPNWHLMDKALQEVTNIDGVLEHHNDFLDRCLKDCMLT 602


>SB_36139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 3/96 (3%)

Query: 123 LDPKKVKKHSGFASSRPMLPLKKYGIESRRFTIWEDKESEFHEKLQKLKDPDNFEVHNLR 182
           LD K    ++ F   + +L      +  R+  I  D   +  E+++ L    + + H+LR
Sbjct: 73  LDEKIPACNNDFEDLQDILQQAANHVFERKKRIQNDWFDDQDEEIRNLLQDKSLDRHSLR 132

Query: 183 SVIREIKECVTK---HLWTVAVEEAQLIHELKLMKD 215
           + IR+IK+   K    + T  + EAQ   ++ L  D
Sbjct: 133 TRIRQIKDAWLKAKTKVLTEFIREAQYADDIALFSD 168


>SB_11434| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 866

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 439 IMELLKLCHSFCSMSEIANDREAEDYYIKGYSERTNLVSI 478
           I++ L+ C+SFC   ++A    A  Y +K Y    NL S+
Sbjct: 510 IVQRLRSCYSFCHSRKVAKCNIAYHYALKTYEFIMNLSSV 549


>SB_44837| Best HMM Match : 7tm_1 (HMM E-Value=0.068)
          Length = 203

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 15/36 (41%), Positives = 19/36 (52%)

Query: 401 ATFLADILSQSFLTVTLSSDSDCSGDPADTLNNPVF 436
           A   A +L +S L   L   +   G PADT+ NPVF
Sbjct: 61  AALFAGLLGKSLLRHWLDFSAHVQGLPADTICNPVF 96


>SB_37314| Best HMM Match : Mlp (HMM E-Value=2)
          Length = 360

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 4/95 (4%)

Query: 123 LDPKKVKKHSGFASSRPMLPLKKYGIESRRFTIWEDKESEFHEKLQKLKDPDNFEVHNLR 182
           LD K    ++ F   + +L      +  R+  I  D   +  E+++ L    + + H+LR
Sbjct: 168 LDEKIPACNNDFEDLQDVLQQAANHVFERKKRIQNDWFDDQDEEIRNLLQDKSLDRHSLR 227

Query: 183 SVIREIKECVTKHLWTVAVEEAQLIHELKLMKDFY 217
           + IR+IK+      +    EEA+   + K  ++FY
Sbjct: 228 TRIRQIKDA----WFQKKAEEAEHFSQTKNPREFY 258


>SB_55438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 158 DKESEFHEKLQKLKDPDN---FEVHNLRSVIREIKECVTKHL 196
           +KE+E  +K++ LKD +     E   LR ++ E+KE V  H+
Sbjct: 155 EKEAELEDKVKVLKDKNTKLVSEAQELRRLVCELKEQVMNHV 196


>SB_48946| Best HMM Match : RVT_1 (HMM E-Value=1.49939e-43)
          Length = 1074

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 4/95 (4%)

Query: 123 LDPKKVKKHSGFASSRPMLPLKKYGIESRRFTIWEDKESEFHEKLQKLKDPDNFEVHNLR 182
           LD K    ++ F   + +L      +  R+  I  D   +  E+++ L      + H+LR
Sbjct: 387 LDEKIPACNNDFEDLQDILQQAANHVFERKKRIQNDWFDDQDEEIRNLLQDKTLDRHSLR 446

Query: 183 SVIREIKECVTKHLWTVAVEEAQLIHELKLMKDFY 217
           + IR+IK+      +    EEA+   + K  ++FY
Sbjct: 447 TRIRQIKDA----WFQKKAEEAEHFSQTKNPREFY 477


>SB_32387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 912

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 4/95 (4%)

Query: 123 LDPKKVKKHSGFASSRPMLPLKKYGIESRRFTIWEDKESEFHEKLQKLKDPDNFEVHNLR 182
           LD K    ++ F   + +L      +  R+  I  D   +  E+++ L    + + H+LR
Sbjct: 242 LDEKIPACNNDFEDLQDILQQAANHVFERKKRIQNDWFDDQDEEIRNLLQDKSLDRHSLR 301

Query: 183 SVIREIKECVTKHLWTVAVEEAQLIHELKLMKDFY 217
           + IR+IK+      +    EEA+   + K  ++FY
Sbjct: 302 TRIRQIKDA----WFQKKAEEAEHFSQTKDPREFY 332


>SB_15964| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-15)
          Length = 602

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 4/95 (4%)

Query: 123 LDPKKVKKHSGFASSRPMLPLKKYGIESRRFTIWEDKESEFHEKLQKLKDPDNFEVHNLR 182
           LD K    ++ F   + +L      +  R+  I  D   +  E+++ L    + + H+LR
Sbjct: 327 LDEKIPACNNDFEDLQDILQQAANHVFERKKRIQNDWFDDQDEEIRNLLQDKSLDRHSLR 386

Query: 183 SVIREIKECVTKHLWTVAVEEAQLIHELKLMKDFY 217
           + IR+IK+      +    EEA+   + K  ++FY
Sbjct: 387 TRIRQIKDA----WFQKKAEEAEHFSQTKDPREFY 417


>SB_15148| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-15)
          Length = 683

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 4/95 (4%)

Query: 123 LDPKKVKKHSGFASSRPMLPLKKYGIESRRFTIWEDKESEFHEKLQKLKDPDNFEVHNLR 182
           LD K    ++ F   + +L      +  R+  I  D   +  E+++ L      + H+LR
Sbjct: 327 LDEKIPACNNDFEDLQDILQQAANHVFERKKRIQNDWFDDQDEEIRNLLQDKTLDRHSLR 386

Query: 183 SVIREIKECVTKHLWTVAVEEAQLIHELKLMKDFY 217
           + IR+IK+      +    EEA+   + K  ++FY
Sbjct: 387 TRIRQIKDA----WFQKKAEEAEHFSQTKNPREFY 417


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.135    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,034,177
Number of Sequences: 59808
Number of extensions: 580451
Number of successful extensions: 1374
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1363
Number of HSP's gapped (non-prelim): 18
length of query: 486
length of database: 16,821,457
effective HSP length: 85
effective length of query: 401
effective length of database: 11,737,777
effective search space: 4706848577
effective search space used: 4706848577
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)