GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001886-TA|BGIBMGA001886-PA|IPR007259|Spc97/Spc98
         (486 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026202-2|AAB71242.2|  501|Caenorhabditis elegans Hypothetical ...    30   3.2  
U97010-1|AAB52322.1|  334|Caenorhabditis elegans Hypothetical pr...    29   7.4  
AC025716-1|AAK39606.1|  788|Caenorhabditis elegans Hypothetical ...    29   7.4  
U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical pr...    29   9.7  

>AF026202-2|AAB71242.2|  501|Caenorhabditis elegans Hypothetical
           protein C10E2.2 protein.
          Length = 501

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 125 PKKVKKHSGFASSRPMLPLKKYGIESRRFTI-WED-KESEFHEKLQKLK 171
           PK+V++      + P+LPL+    +S   T  +ED  E E  EK +KLK
Sbjct: 140 PKRVRQRDPLHPAHPLLPLRNMPYDSSSPTEGFEDSSEDEMREKREKLK 188


>U97010-1|AAB52322.1|  334|Caenorhabditis elegans Hypothetical
           protein W08A12.4 protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 145 KYGIESRRFTIWEDK-ESEFHEKLQKLKDPDNFEVHNLRSVIREIKECVTKHLWTVAVE 202
           KY       T+   K + EF EK QKL +        +     EIK+ +   +W   +E
Sbjct: 145 KYQQAQEEHTLRRQKIDEEFEEKCQKLNEEAQQRQREMNRQFEEIKKIMQMRVWNDTIE 203


>AC025716-1|AAK39606.1|  788|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.11 protein.
          Length = 788

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 372 QADVLETNFSRLMDAVNKTNDF-EKLKKAHATFLADILSQSFLTVTLSSDSDCSGDPADT 430
           Q++  E +  R  D V++  +  E+LKK     + +    S  +   SSDSDCS D +D+
Sbjct: 691 QSEAQEFDRLRWNDQVDQLKEVNEELKKNLGVEVLESSDDSDCSSDSSSDSDCSSDSSDS 750


>U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical
           protein F37A4.4 protein.
          Length = 1163

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 358 NKLMFLMDNLQHYMQADV----LETNFSRLMDAVNKTNDFEKLKKAHATFLADILSQSFL 413
           +KL+ ++  +QH MQ D+    L+ N     +   K  + EKL K   +  A   S S  
Sbjct: 522 SKLLKMLQFMQHMMQLDIDYSTLKANLDNFFELKKKMLETEKLVKGFTSRSARAASNSGS 581

Query: 414 TVTLSSDSDCSGD 426
            V    DS    D
Sbjct: 582 PVLKIKDSQKHAD 594


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.135    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,428,750
Number of Sequences: 27539
Number of extensions: 459853
Number of successful extensions: 1225
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1225
Number of HSP's gapped (non-prelim): 4
length of query: 486
length of database: 12,573,161
effective HSP length: 84
effective length of query: 402
effective length of database: 10,259,885
effective search space: 4124473770
effective search space used: 4124473770
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)