BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001885-TA|BGIBMGA001885-PA|IPR001781|LIM, zinc-binding (492 letters) Database: tribolium 317 sequences; 114,650 total letters Searching....................................................done Score E Sequences producing significant alignments: (bits) Value AM295015-1|CAL25730.1| 549|Tribolium castaneum ecdysone recepto... 28 0.17 AJ415419-1|CAC94468.1| 441|Tribolium castaneum transcription fa... 25 0.91 AY884061-1|AAX84202.1| 717|Tribolium castaneum laccase 2A protein. 23 4.9 AY531876-2|AAT08871.1| 340|Tribolium castaneum tyrosine recombi... 22 8.5 >AM295015-1|CAL25730.1| 549|Tribolium castaneum ecdysone receptor (isoform A) protein. Length = 549 Score = 27.9 bits (59), Expect = 0.17 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 16/70 (22%) Query: 294 ICVKCGERISGENAGCTAMGNTYHVHCFTCQRC----NVNLQGKPFYDVENEPYCEADYY 349 +C+ CG+R SG YH + TC+ C ++ Y + CE D Y Sbjct: 187 LCLVCGDRASG-----------YHYNALTCEGCKGFFRRSITKNAVYQCKYGNNCEIDMY 235 Query: 350 DTLEKCCVCR 359 KC CR Sbjct: 236 -MRRKCQECR 244 >AJ415419-1|CAC94468.1| 441|Tribolium castaneum transcription factor protein. Length = 441 Score = 25.4 bits (53), Expect = 0.91 Identities = 24/101 (23%), Positives = 28/101 (27%), Gaps = 4/101 (3%) Query: 146 HNLQYMTLPLPNPSSGVHQEYMMPVLSKSPVTTNSEEYMPPPSPVSSNYSELARANANLN 205 H Q P P+ P SP PP P + + N Sbjct: 290 HIQQATPYSAPGPTYSTWSTVQTPTTVMSPTINCWSLTSSPPPPYQISAQPTPSQSPNQI 349 Query: 206 Y----NHDRTCPPVYQNNFPEYNMSQAPTYESFYEPISPHP 242 Y N P Y N Q P Y S P SP+P Sbjct: 350 YQPVTNLTNLTYPSYYNQDVSCTHYQNPEYISVVNPESPYP 390 >AY884061-1|AAX84202.1| 717|Tribolium castaneum laccase 2A protein. Length = 717 Score = 23.0 bits (47), Expect = 4.9 Identities = 7/15 (46%), Positives = 11/15 (73%) Query: 183 YMPPPSPVSSNYSEL 197 YM PP+P+ S Y ++ Sbjct: 533 YMAPPAPLISQYDDI 547 >AY531876-2|AAT08871.1| 340|Tribolium castaneum tyrosine recombinase protein. Length = 340 Score = 22.2 bits (45), Expect = 8.5 Identities = 9/20 (45%), Positives = 12/20 (60%) Query: 333 KPFYDVENEPYCEADYYDTL 352 KP YDV +P DY++ L Sbjct: 131 KPKYDVTWDPAVVLDYFERL 150 Database: tribolium Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 114,650 Number of sequences in database: 317 Lambda K H 0.318 0.132 0.410 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 113,888 Number of Sequences: 317 Number of extensions: 5404 Number of successful extensions: 11 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 4 length of query: 492 length of database: 114,650 effective HSP length: 59 effective length of query: 433 effective length of database: 95,947 effective search space: 41545051 effective search space used: 41545051 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits) S2: 45 (22.2 bits)
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