Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001885-TA|BGIBMGA001885-PA|IPR001781|LIM, zinc-binding
         (492 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    28   0.17 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    25   0.91 
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   4.9  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    22   8.5  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 27.9 bits (59), Expect = 0.17
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 16/70 (22%)

Query: 294 ICVKCGERISGENAGCTAMGNTYHVHCFTCQRC----NVNLQGKPFYDVENEPYCEADYY 349
           +C+ CG+R SG           YH +  TC+ C      ++     Y  +    CE D Y
Sbjct: 187 LCLVCGDRASG-----------YHYNALTCEGCKGFFRRSITKNAVYQCKYGNNCEIDMY 235

Query: 350 DTLEKCCVCR 359
               KC  CR
Sbjct: 236 -MRRKCQECR 244


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 25.4 bits (53), Expect = 0.91
 Identities = 24/101 (23%), Positives = 28/101 (27%), Gaps = 4/101 (3%)

Query: 146 HNLQYMTLPLPNPSSGVHQEYMMPVLSKSPVTTNSEEYMPPPSPVSSNYSELARANANLN 205
           H  Q      P P+         P    SP          PP P   +       + N  
Sbjct: 290 HIQQATPYSAPGPTYSTWSTVQTPTTVMSPTINCWSLTSSPPPPYQISAQPTPSQSPNQI 349

Query: 206 Y----NHDRTCPPVYQNNFPEYNMSQAPTYESFYEPISPHP 242
           Y    N      P Y N        Q P Y S   P SP+P
Sbjct: 350 YQPVTNLTNLTYPSYYNQDVSCTHYQNPEYISVVNPESPYP 390


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 183 YMPPPSPVSSNYSEL 197
           YM PP+P+ S Y ++
Sbjct: 533 YMAPPAPLISQYDDI 547


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 333 KPFYDVENEPYCEADYYDTL 352
           KP YDV  +P    DY++ L
Sbjct: 131 KPKYDVTWDPAVVLDYFERL 150


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.132    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,888
Number of Sequences: 317
Number of extensions: 5404
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 4
length of query: 492
length of database: 114,650
effective HSP length: 59
effective length of query: 433
effective length of database: 95,947
effective search space: 41545051
effective search space used: 41545051
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)