Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001885-TA|BGIBMGA001885-PA|IPR001781|LIM, zinc-binding
(492 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 82 1e-16
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 76 1e-14
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 52 2e-07
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 35 0.022
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 32 0.21
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 32 0.21
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 32 0.21
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi... 31 0.28
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 29 1.1
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 29 1.9
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 29 1.9
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 28 2.6
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 2.6
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 28 2.6
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|... 28 3.4
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 27 4.5
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 27 4.5
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 27 4.5
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 27 5.9
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 27 5.9
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 27 7.8
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 82.2 bits (194), Expect = 1e-16
Identities = 61/230 (26%), Positives = 100/230 (43%), Gaps = 26/230 (11%)
Query: 237 PISPHPSSKTAMQENNLITKKEALSK-RSPLPKEQEV--DALTNLLVQSITDSQDLDVFG 293
P S H S+ + + ++++ ++ R LP +Q++ L N Q D VF
Sbjct: 45 PHSRHTSTVAGTEGGSSLSRRHTSAESRKALPNQQQLAQSGLLNKEEQQSLKRSDTSVFP 104
Query: 294 ----------ICVKCGERISGENAGCTAMGNTYHVHCFTCQRCNVNLQGKPFYDVENE-- 341
IC CG+ ISG+ A+GN YH+ CF C CN +L F+ +++
Sbjct: 105 KAVRKVSSSKICASCGQVISGQYV--RALGNIYHLECFRCHDCN-SLVASKFFPIDDPTL 161
Query: 342 ----PYCEADYYDTLEKCCV-CRKIILDRILRATGKPYHPTCFSCVECGKSLDGIPFTVD 396
P CE DY+ L+ C C + + A K +H F+C C +
Sbjct: 162 NKQVPLCETDYFRRLDLLCASCGMALRGYYITALNKKFHIEHFTCSLCYTVFGPNDSYYE 221
Query: 397 AMNQIHCIDDFHKKFAPRCCVCELPIMPEEGQEETVRVVALDRSFHVKCY 446
+++C + FA RCC C+ PI+ Q V + +++HV C+
Sbjct: 222 YEGKVYCHYHYSTLFAARCCGCDGPIL---RQFVEVYRNGVSQNWHVPCH 268
Score = 44.4 bits (100), Expect = 4e-05
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 11/101 (10%)
Query: 355 CCVCRKIILDRILRATGKPYHPTCFSCVECGKSLDGIPFTVD--AMN-QIH-CIDDFHKK 410
C C ++I + +RA G YH CF C +C + F +D +N Q+ C D+ ++
Sbjct: 116 CASCGQVISGQYVRALGNIYHLECFRCHDCNSLVASKFFPIDDPTLNKQVPLCETDYFRR 175
Query: 411 FAPRCCVCELPIMPEEGQEETVRVVALDRSFHVKCYRCEDC 451
C C + + + AL++ FH++ + C C
Sbjct: 176 LDLLCASCGMAL-------RGYYITALNKKFHIEHFTCSLC 209
Score = 35.1 bits (77), Expect = 0.022
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 11/57 (19%)
Query: 434 VVALDRSFHVKCYRCEDCGLLLSSEAEGRGCYPLDDHI------LCKTCNARRVRLL 484
V AL +H++C+RC DC L++S+ +P+DD LC+T RR+ LL
Sbjct: 128 VRALGNIYHLECFRCHDCNSLVASK-----FFPIDDPTLNKQVPLCETDYFRRLDLL 179
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 76.2 bits (179), Expect = 1e-14
Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 15/190 (7%)
Query: 295 CVKCGERISGENAGCTAMGNTYHVHCFTCQRCNVNLQGKPFYDVENEPYCEADYYDTLE- 353
C CG + +A G H CF C C+ NL+ FY E + YC DY++
Sbjct: 258 CHSCGGSLRAGRI-ISASGKKLHPQCFKCDTCSQNLEHVGFYYREGKFYCHLDYHEQFSP 316
Query: 354 KCCVCRKIILDRILRATGKPYHPTCFSCVECGKSLD-GIPFTVDAMNQIHCIDDFHKKFA 412
+C C+ I D+ + +H C C + + IP + + C + K+A
Sbjct: 317 RCKHCKTPIEDQAVHINNDWFHENHHFCAGCSEVFNVNIP-CIYRDDLYWCQTCYDNKYA 375
Query: 413 PRCCVCELPIMPEEGQEETVRVVALDRSFHVKCYRCEDCGLLLSSEAEGRGCYPLDDHIL 472
+C C PI+ + V D +H +C+ C C LL E G + +++ +
Sbjct: 376 VKCKKCRKPIL-------GISVKGSDGEYHSQCWTCGACNALLGDE----GYFMIENTPI 424
Query: 473 CKTCNARRVR 482
C+ C A V+
Sbjct: 425 CRPCKAISVK 434
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 51.6 bits (118), Expect = 2e-07
Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 8/128 (6%)
Query: 281 QSITDSQDLDVFGICVKCGERISGENAGCTAMGNTYHVHCFTCQRCNVNLQGKPFYDV-- 338
+SI+ S +C +CG+ + G+ +H CF C +C+ L+ V
Sbjct: 5 KSISKSPSSKGSTVCFRCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGLEHSDQMLVQT 64
Query: 339 -ENEPYCEADYYDTLEKCCVCRKIILDRILRATGKPYHPTCFSCVECGKSLDGIPFTVDA 397
+ P C + C CR I D L + YH CF C +C K + F D
Sbjct: 65 SDGRPVCSS----CAHTCTACRMRIKDYALMSGYDSYHRECFRCHDCRKQIIDSNFKRD- 119
Query: 398 MNQIHCID 405
I C D
Sbjct: 120 NRTIFCND 127
Score = 31.9 bits (69), Expect = 0.21
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 371 GKPYHPTCFSCVECGKSLDGIPFTVDAMNQIHCIDDFHKKFAPRCCVCELPIMPEEGQEE 430
G +H CF C +C K G+ + + Q A C C + I ++
Sbjct: 37 GHMWHKDCFCCTKCDK---GLEHSDQMLVQTSDGRPVCSSCAHTCTACRMRI------KD 87
Query: 431 TVRVVALDRSFHVKCYRCEDC 451
+ D S+H +C+RC DC
Sbjct: 88 YALMSGYD-SYHRECFRCHDC 107
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 35.1 bits (77), Expect = 0.022
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 371 GKPYHPTCFSCVECGKSLD--GIPFTVDAMNQIHC 403
GK +H CF CV C K LD F+ D QI C
Sbjct: 41 GKCWHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFC 75
Score = 34.7 bits (76), Expect = 0.030
Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 12/92 (13%)
Query: 295 CVKCGERISGENAGCTAMGNTYHVHCFTCQRCNVNLQGKPFYDVENEPYCEADYYDTLEK 354
C+KC E + + G +H CF C CN L D +E + + D K
Sbjct: 24 CIKCWESVPSTSQVWFG-GKCWHSDCFKCVNCNKKL------DPSSEDFSQDDQKQIFCK 76
Query: 355 CCV-----CRKIILDRILRATGKPYHPTCFSC 381
CV C I + + + HP C +C
Sbjct: 77 LCVDICNGCSTPICEFNAVSNSQANHPCCSNC 108
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 31.9 bits (69), Expect = 0.21
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 190 VSSNYSELARANANLNYNHDRTCPPVYQNNF-----PEYNMSQAPTYESFYEPISPHPSS 244
+SSN S N+N+ H N+F P+ TYE+ P+S
Sbjct: 28 ISSNTSSSNSENSNIQGKHYTQVGEDADNSFISENTPKNTFESTQTYENLESISKNEPTS 87
Query: 245 KTAMQENNLITKKEALSKRSPLPKE 269
+ + N + +E L + PLP E
Sbjct: 88 EASKPLLNELVPEEPLPREPPLPNE 112
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 31.9 bits (69), Expect = 0.21
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 379 FSCVECGKS-LDGIPFTV-DAMNQIHCIDDFHKKFAPRCCVCELPIMPEEGQEETVRVVA 436
F C +CG + IP + ++++ +D++ F R C+C+ PE + + +
Sbjct: 85 FRC-DCGTTRTHSIPCNLRKSVDECGSENDYNHNFEGRFCICDTVYNPETEEGTMFQCIL 143
Query: 437 LDRSFHVKCYRCEDCGLLL 455
+ FH KC + + G+ +
Sbjct: 144 CEDWFHEKCLQKTNKGIAI 162
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 31.9 bits (69), Expect = 0.21
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 151 MTLPLPNPSS---GVHQEYMMPVLSKSPVTTNSEEYMPPPSPVSSNYSELARANANLNYN 207
+T P +PSS YM S SP + + P SP S +YS + + + + +
Sbjct: 1553 LTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPS 1612
Query: 208 HDRTCPPVYQNNFPEY---NMSQAPTYESFYEPISP 240
+ T P Y P Y + S +PT S Y P SP
Sbjct: 1613 YSPTSPS-YSPTSPSYSPTSPSYSPTSPS-YSPTSP 1646
Score = 28.7 bits (61), Expect = 1.9
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 152 TLPLPNPSSGVHQEYMMPVLSKSPVTTNSEEYMPPPSPVSSNYSELARANANLNYNHDRT 211
T P +P+S Y S SP + + P SP S +YS + + + + ++ T
Sbjct: 1595 TSPSYSPTS---PSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1651
Query: 212 CPPVYQNNFPEY---NMSQAPTYESFYEPISP 240
P Y P Y + S +PT S Y P SP
Sbjct: 1652 SPS-YSPTSPSYSPTSPSYSPTSPS-YSPTSP 1681
Score = 28.3 bits (60), Expect = 2.6
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 172 SKSPVTTNSEEYMPPPSPVSSNYSELARANANLNYNHDRTCPPVYQNNFPEY---NMSQA 228
S SP + + P SP S +YS + + + + ++ T P Y P Y + S +
Sbjct: 1647 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYS 1705
Query: 229 PTYESFYEPISP 240
PT S Y P SP
Sbjct: 1706 PTSPS-YSPTSP 1716
Score = 28.3 bits (60), Expect = 2.6
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 172 SKSPVTTNSEEYMPPPSPVSSNYSELARANANLNYNHDRTCPPVYQNNFPEY---NMSQA 228
S SP + + P SP S +YS + + + + ++ T P Y P Y + S +
Sbjct: 1682 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYS 1740
Query: 229 PTYESFYEPISP 240
PT S Y P SP
Sbjct: 1741 PTSPS-YSPTSP 1751
>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
Dma1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 31.5 bits (68), Expect = 0.28
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 413 PRCCVCELPIMPEEGQEETVRVVALDRSFHVKCYR 447
P CC+C +P++P + + V S+H KC R
Sbjct: 190 PECCICLMPVLP----CQALFVAPCSHSYHYKCIR 220
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 187 PSPVSSNYSELARANANLNYNHDRTCPPVYQNNFPEYNMSQAPTYESFYEPISP 240
P P+SSN+ ++H T PP + P ++ + P F P+SP
Sbjct: 149 PEPLSSNHVRSCPPFPPTQHHHPHTRPP-HHPPHPHFHNNNYPPPYCFQSPVSP 201
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 189 PVSSNYSELARANANLNYNHDRTCPPVYQNNFPEYNMSQ-APTYESFYEPISPHP 242
P + + L RA N+N + T P Y P YN + P+Y + + P P
Sbjct: 244 PHTQYQNNLLRAQPNVNCENFPTTVPNYPFQQPSYNPNALVPSYTTLVSQLPPSP 298
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 28.7 bits (61), Expect = 1.9
Identities = 27/133 (20%), Positives = 50/133 (37%), Gaps = 5/133 (3%)
Query: 145 THNLQYMTLPLPNPSSGVHQEYMMPVLSKSPVTTNSEEYMPPPSPVSSNYSELARANAN- 203
TH L PLP+ SS + + P+ VT + + N+ + AN +
Sbjct: 445 THGLVSDIRPLPSVSSPIMRADSTPISHNLAVTPSFSPIPQQSNKSIGNHKNTSVANVSS 504
Query: 204 --LNYNHDRTCPPVYQNN--FPEYNMSQAPTYESFYEPISPHPSSKTAMQENNLITKKEA 259
N +R + +N P A E + I HP K + ++T +A
Sbjct: 505 KVANSKFERNISMMSNSNASSPAIFEVGAEAKEKTKDAIPCHPDDKLMIPSPKIVTHGDA 564
Query: 260 LSKRSPLPKEQEV 272
+ + L ++ ++
Sbjct: 565 MQEEQRLRQKSQI 577
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 28.3 bits (60), Expect = 2.6
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 12/111 (10%)
Query: 152 TLPLPNPSSGV-HQEY-MMPVLSKSPVTTNSE-----EYMPPPSPVSSNYSELARANANL 204
T PLP +S + +Q Y +MP P +S YMPPP S+ + ++ A+
Sbjct: 443 TTPLPTANSPIAYQSYSVMPTYWSFPQNYDSTVPAVYPYMPPPFS-GSDMNVMSNPAADT 501
Query: 205 NYNHDRTCPPVYQNNFPEYNMSQAPTYESFYEPISPHPSSKTAMQENNLIT 255
R+ P Q + P + +Y P+S ++ T+ +NL T
Sbjct: 502 L----RSYSPASQVSTPPFGFVYYYDPNQYYVPVSNESANATSQPLSNLDT 548
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 28.3 bits (60), Expect = 2.6
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 175 PVTTNSEEYMPPPSPVSSNYSELARANANLNYNHDRTCPPVYQNN----FPEYNMSQAPT 230
PV N MPPP SS+ S +N NY P N P +SQ +
Sbjct: 142 PVRPNVMSQMPPPPSYSSSGSYSQTYQSNANYTASSPLPTASANAPLPVPPPRRVSQNSS 201
Query: 231 YESFYEPISPHPSSKTAMQE 250
Y S P + S+ + +++
Sbjct: 202 YASGSVPAATAASTASPVKK 221
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 28.3 bits (60), Expect = 2.6
Identities = 21/106 (19%), Positives = 41/106 (38%)
Query: 184 MPPPSPVSSNYSELARANANLNYNHDRTCPPVYQNNFPEYNMSQAPTYESFYEPISPHPS 243
+P +P YS ++A+L+ RT ++ + +PT S P P +
Sbjct: 138 LPASAPKHDLYSSANASSASLHPTEQRTTSSPTIPSYANRTHTDSPTSLSHRLPNVPDTN 197
Query: 244 SKTAMQENNLITKKEALSKRSPLPKEQEVDALTNLLVQSITDSQDL 289
+ +Q NN T + ++ + + +L S+ S L
Sbjct: 198 ALNTVQANNSSTSSLSQGAQTGIDSSSNYLSRIEMLESSLAKSNSL 243
>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 278
Score = 27.9 bits (59), Expect = 3.4
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 168 MPVLSKSPVTTNSEE----YMPPPSPVSSNYSELARANANLNYNHDRTCPPVYQNNFPEY 223
+P++S + N EE + P PV ++ + ++ N+N Y + C +Y N Y
Sbjct: 15 LPLVSHKNMLENEEEASHSQLFTPCPVPPSFPKASKPNSNQPYPNGPVC--IYPPNIYLY 72
Query: 224 NMSQAPTYESF 234
P +SF
Sbjct: 73 AKPTMPIIQSF 83
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 27.5 bits (58), Expect = 4.5
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 191 SSNYSELARANANLNYNHDRTCPPVYQNNFPEYNMSQAPTYESFYEPISPHPSSKTAMQE 250
S NYS + N N + R P + ++ ++ + Y+ E S HPS+ + Q+
Sbjct: 190 SVNYSYFS-PNLLGNDSKTRQSFPPHSSSSSHNSLHEPVIYDFSSENPSIHPSNHLSSQK 248
Query: 251 NNLITKKEALSKRSPLPKEQEVDALTNLL 279
N ++ + +S LP+ L +LL
Sbjct: 249 NAVLKLAQLISSFEKLPESVRQYLLFHLL 277
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 27.5 bits (58), Expect = 4.5
Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 4/110 (3%)
Query: 247 AMQENNLITKKEALSKRSPLPKEQEVDALTNLLVQSITDSQDLDVFGICVKCGERISGEN 306
A+ NNL+ K++ P KEQE N L ++ F + IS N
Sbjct: 1650 ALVYNNLVRAKDS----PPYTKEQEKAVYLNPLARASKSKAGTWTFPATLPAESDISKTN 1705
Query: 307 AGCTAMGNTYHVHCFTCQRCNVNLQGKPFYDVENEPYCEADYYDTLEKCC 356
+ + + + V+++ ++NE + E ++ DT K C
Sbjct: 1706 ETTRTLQSLTTSLTNSNENVGVDVELVSAISIDNETFIERNFTDTERKYC 1755
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 27.5 bits (58), Expect = 4.5
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
Query: 446 YRCEDCGLLLSSEAEGRGCYPLDDHILCKTC 476
Y C+DCG+ GRG DD+ CKTC
Sbjct: 224 YHCDDCGIC----RIGRGLG--DDYFHCKTC 248
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 27.1 bits (57), Expect = 5.9
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 192 SNYSELARANANLNYNHDRTCPPVYQNNFPEYNMSQAPTYESFYEPISPHPSSKTAMQEN 251
S + + R AN + ++ + P +N P + + + +E SPHP+ E
Sbjct: 569 SRSANMIRQGANGSDSNMSSSPVSGNSNTPFNKFPNSVSRNTHFESKSPHPNYSRTPHE- 627
Query: 252 NLITKKEALSKRSPL-PKEQEV 272
T +A SK PL P +Q V
Sbjct: 628 ---TYSKASSKNVPLSPPKQRV 646
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 27.1 bits (57), Expect = 5.9
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 78 TLMSQKDYANLNHLEDDFESST--LRQNLSNTTYSNLSHYKAN 118
T+MS + +LN L D ST L NL+NT + + N
Sbjct: 1321 TIMSNNSFTSLNGLRTDSADSTDALNSNLNNTVENEANQTALN 1363
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 233 SFYE--PISPHPSSKTAMQENNLITKKEALSKRSPLP 267
SF++ P+ P S++T + ++ T A+SK +P P
Sbjct: 162 SFFDDIPLGPSFSAETILSSLSISTSNNAMSKTTPAP 198
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.132 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,205,744
Number of Sequences: 5004
Number of extensions: 97214
Number of successful extensions: 334
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 286
Number of HSP's gapped (non-prelim): 32
length of query: 492
length of database: 2,362,478
effective HSP length: 76
effective length of query: 416
effective length of database: 1,982,174
effective search space: 824584384
effective search space used: 824584384
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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