Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001885-TA|BGIBMGA001885-PA|IPR001781|LIM, zinc-binding
(492 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g39830.1 68415.m04892 LIM domain-containing protein contains ... 43 4e-04
At1g01780.1 68414.m00097 LIM domain-containing protein similar t... 39 0.007
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 39 0.009
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 37 0.035
At5g66610.1 68418.m08396 LIM domain-containing protein contains ... 36 0.061
At3g61230.1 68416.m06852 LIM domain-containing protein similar t... 36 0.061
At2g40820.1 68415.m05038 proline-rich family protein contains pr... 36 0.061
At3g55770.1 68416.m06197 LIM domain-containing protein similar t... 35 0.11
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 35 0.11
At2g32840.2 68415.m04021 proline-rich family protein Common fam... 35 0.14
At2g32840.1 68415.m04020 proline-rich family protein Common fam... 35 0.14
At2g39900.1 68415.m04904 LIM domain-containing protein similar t... 34 0.19
At4g36860.1 68417.m05226 LIM domain-containing protein low simil... 33 0.33
At5g66630.1 68418.m08398 LIM domain-containing protein contains ... 33 0.57
At5g62640.1 68418.m07862 proline-rich family protein contains pr... 32 0.99
At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99... 31 1.3
At1g10200.1 68414.m01150 transcription factor LIM, putative stro... 31 1.3
At5g24370.1 68418.m02873 invertase/pectin methylesterase inhibit... 31 2.3
At2g38410.1 68415.m04718 VHS domain-containing protein / GAT dom... 31 2.3
At1g77250.1 68414.m08997 PHD finger family protein contains Pfam... 31 2.3
At2g25380.1 68415.m03039 zinc finger protein-related very low si... 30 3.0
At5g66620.1 68418.m08397 LIM domain-containing protein contains ... 30 4.0
At5g16910.1 68418.m01982 cellulose synthase family protein simil... 30 4.0
At3g45840.1 68416.m04961 DC1 domain-containing protein contains ... 30 4.0
At2g21830.1 68415.m02594 DC1 domain-containing protein contains ... 30 4.0
At1g55540.1 68414.m06356 proline-rich family protein contains pr... 30 4.0
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 29 5.3
At3g60300.1 68416.m06740 RWD domain-containing protein contains ... 29 5.3
At3g42670.1 68416.m04437 SNF2 domain-containing protein / helica... 29 5.3
At1g79480.1 68414.m09263 hypothetical protein low similarity to ... 29 5.3
At1g68880.1 68414.m07883 bZIP transcription factor family protei... 29 5.3
At5g14540.1 68418.m01704 proline-rich family protein contains pr... 29 7.0
At4g38870.1 68417.m05504 F-box family protein contains Pfam prof... 29 7.0
At3g62670.1 68416.m07040 two-component responsive regulator fami... 29 7.0
At3g57480.1 68416.m06399 zinc finger (C2H2 type, AN1-like) famil... 29 7.0
At2g41835.1 68415.m05170 zinc finger (C2H2 type, AN1-like) famil... 29 7.0
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 29 9.3
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 29 9.3
At3g48980.1 68416.m05350 expressed protein 29 9.3
At3g13840.1 68416.m01747 scarecrow transcription factor family p... 29 9.3
At2g20240.1 68415.m02365 expressed protein 29 9.3
At1g53260.1 68414.m06035 hypothetical protein low similarity to ... 29 9.3
>At2g39830.1 68415.m04892 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 503
Score = 43.2 bits (97), Expect = 4e-04
Identities = 44/178 (24%), Positives = 69/178 (38%), Gaps = 24/178 (13%)
Query: 294 ICVKCGERI-SGENAGCTAMGNTYHVHCFTCQRCNVNLQGK--PFYD---VE-------N 340
IC C I SG GC MG +H CF C C + P D +E N
Sbjct: 161 ICGGCNSDIGSGNYLGC--MGTFFHPECFRCHSCGYAITEHEIPTNDAGLIEYRCHPFWN 218
Query: 341 EPYCEADYYDTLEKCCVCRKIILDRILRATGKPYHPTCFSCVECGKSLDGIPFTVDAMNQ 400
+ YC + YD +CC C ++ + T + C C+E I T +
Sbjct: 219 QKYCPSHEYDKTARCCSCERLESWDVRYYTLEDGRSLCLECME-----TAITDTGECQPL 273
Query: 401 IHCIDDFHKKFAPRCCVCELPIMPEEGQEETVRVVALDRSFHVKCYRCEDCGLLLSSE 458
H I D+++ + ++P++ + + +V +H + E GL LS E
Sbjct: 274 YHAIRDYYEGMYMKLDQ-QIPMLLVQREALNDAIVGEKNGYH---HMPETRGLCLSEE 327
>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 205
Score = 39.1 bits (87), Expect = 0.007
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 351 TLEKCCVCRKII-LDRILRATGKPYHPTCFSCVECGKSL 388
TL+KC VC K + + +L G PYH +CF C C +L
Sbjct: 6 TLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTL 44
Score = 33.1 bits (72), Expect = 0.43
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 351 TLEKCCVCRKII--LDRILRATGKPYHPTCFSCVECGKSLDGIPF-TVDAMNQIHCIDDF 407
T +KC C K + L++I + G+ +H TCF C G +L + ++D++ ++C F
Sbjct: 100 TQDKCAACEKTVYPLEKI-QMEGECFHKTCFRCAHGGCTLTHSSYASLDSV--LYCRHHF 156
Query: 408 HKKF 411
++ F
Sbjct: 157 NQLF 160
Score = 30.3 bits (65), Expect = 3.0
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 313 GNTYHVHCFTCQRCNVNLQGKPFYDVENEPYCEADY 348
G YH CF C C LQ + ++ YC+ +
Sbjct: 27 GMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKTHF 62
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 38.7 bits (86), Expect = 0.009
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 340 NEPYCEADYYDTLEKCCVCRKIILDRI-LRATGKPYHPTCFSCVECGKSLDGIPFTVDAM 398
++ + E + L KC C+ I D I + A G +HP CF C+ C + + + D
Sbjct: 1225 SKDHVEEEVNPPLSKCKDCKSAIEDGISINAYGSVWHPQCFCCLRCREPI-AMNEISDLR 1283
Query: 399 NQIH--CIDDFHKKFAPRCCVCELPI 422
H C + P C VCE I
Sbjct: 1284 GMYHKPCYKELRH---PNCYVCEKKI 1306
Score = 30.3 bits (65), Expect = 3.0
Identities = 27/110 (24%), Positives = 34/110 (30%), Gaps = 4/110 (3%)
Query: 295 CVKCGERISGENAGCTAMGNTYHVHCFTCQRCNVNLQGKPFYDVENEPYCEADYYDTLE- 353
C C I + A G+ +H CF C RC + D+ Y + Y +
Sbjct: 1240 CKDCKSAIE-DGISINAYGSVWHPQCFCCLRCREPIAMNEISDLRG-MYHKPCYKELRHP 1297
Query: 354 KCCVCRKIILDRILRATGKPYHPTCFSCVECGKSLDGIPFTVDAMNQIHC 403
C VC K I R HP DG P HC
Sbjct: 1298 NCYVCEKKI-PRTAEGLKYHEHPFWMETYCPSHDGDGTPKCCSCERLEHC 1346
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 36.7 bits (81), Expect = 0.035
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 292 FGICVKCGERISGENAGCTAMGNTYHVHCFTCQRCNVNLQGKPFYDVENEPYCEADYYDT 351
F IC C I G + + +H CF C C+ + F N P+ +A Y +
Sbjct: 169 FRICAGCNMEI-GHGRFLNCLNSLWHPECFRCYGCSQPISEYEFSTSGNYPFHKACYRER 227
Query: 352 LE-KCCVCRKII 362
KC VC I
Sbjct: 228 YHPKCDVCSHFI 239
Score = 34.7 bits (76), Expect = 0.14
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 355 CCVCR-KIILDRILRATGKPYHPTCFSCVECGKSLDGIPFTVDAMNQIHCIDDFHKKFAP 413
C C +I R L +HP CF C C + + F+ H + +++ P
Sbjct: 172 CAGCNMEIGHGRFLNCLNSLWHPECFRCYGCSQPISEYEFSTSGNYPFHKA-CYRERYHP 230
Query: 414 RCCVC 418
+C VC
Sbjct: 231 KCDVC 235
>At5g66610.1 68418.m08396 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 529
Score = 35.9 bits (79), Expect = 0.061
Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 3/93 (3%)
Query: 294 ICVKCGERISGENAGCTAMGNTYHVHCFTCQRCN--VNLQGKPFYDVENEPYCEADYYDT 351
IC C I A+G +H CF C+ C+ + + + E YC D
Sbjct: 200 ICDGCKSAIE-YGRSVHALGVNWHPECFCCRYCDKPIAMHEYKEHPFWKEKYCPFHEVDG 258
Query: 352 LEKCCVCRKIILDRILRATGKPYHPTCFSCVEC 384
KCC C ++ C C+EC
Sbjct: 259 TPKCCSCERLEPWGTKYVMLADNRWLCVKCMEC 291
Score = 34.3 bits (75), Expect = 0.19
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 355 CCVCRKII-LDRILRATGKPYHPTCFSCVECGKSLDGIPFTVDAM-NQIHCIDDFHK-KF 411
C C+ I R + A G +HP CF C C K + + + +C FH+
Sbjct: 201 CDGCKSAIEYGRSVHALGVNWHPECFCCRYCDKPIAMHEYKEHPFWKEKYC--PFHEVDG 258
Query: 412 APRCCVCELPIMPEEGQEETVRVVALDRSFHVKCYRC 448
P+CC CE + G + ++A +R VKC C
Sbjct: 259 TPKCCSCER--LEPWGTKYV--MLADNRWLCVKCMEC 291
>At3g61230.1 68416.m06852 LIM domain-containing protein similar to
SP|P29675 Pollen specific protein SF3 {Helianthus
annuus}; contains Pfam profile PF00412: LIM domain
Length = 213
Score = 35.9 bits (79), Expect = 0.061
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 346 ADYYDTLEKCCVCRKII-LDRILRATGKPYHPTCFSCVECGKSL 388
A + T +KC C K + + ++ G PYH +CF C C +L
Sbjct: 2 AAFTGTTDKCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTL 45
Score = 33.5 bits (73), Expect = 0.33
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 351 TLEKCCVCRKIILD-RILRATGKPYHPTCFSCVECG 385
T +KC C+K + + G+ YH TCF C G
Sbjct: 103 TQDKCAACKKTVYPLEKMTMEGESYHKTCFRCAHSG 138
Score = 29.5 bits (63), Expect = 5.3
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 310 TAMGNTYHVHCFTCQRCNVNLQGKPFYDVENEPYCEADY 348
T G YH CF C CN L + ++ YC+ +
Sbjct: 25 TLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCKTHF 63
>At2g40820.1 68415.m05038 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 903
Score = 35.9 bits (79), Expect = 0.061
Identities = 31/105 (29%), Positives = 41/105 (39%), Gaps = 5/105 (4%)
Query: 146 HNLQYMTLPLPNPSSGVHQEYMMPVLSKSPVTTNSEEYMPPPSPVSSNYSELARANANLN 205
H+ P+ N + + Q Y P + P NS YMP P S N S + N N
Sbjct: 739 HHSSMPNPPMTNTNPQMQQPYYPPPMQPPPPPMNSG-YMPTYIPKSVNDSSMPNPPMN-N 796
Query: 206 YNHDRT---CPPVYQNNFPEYNMSQAPTYESFYEPISPHPSSKTA 247
N PP Q P N PTY E ++ PSS ++
Sbjct: 797 TNPQMQQPYYPPPMQPAPPPMNSGYMPTYIPNSENVTNIPSSSSS 841
>At3g55770.1 68416.m06197 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 199
Score = 35.1 bits (77), Expect = 0.11
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 351 TLEKCCVCRKIILD-RILRATGKPYHPTCFSCVECGKSL 388
T +KC C K + +L A G YH +CF C C L
Sbjct: 6 TQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRL 44
Score = 31.5 bits (68), Expect = 1.3
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 310 TAMGNTYHVHCFTCQRCNVNLQGKPFYDVENEPYCEADY 348
+A G YH CF C C LQ + +E YC+ +
Sbjct: 24 SADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPHF 62
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 35.1 bits (77), Expect = 0.11
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 351 TLEKCCVCRKII-LDRILRATGKPYHPTCFSCVECGKSL 388
TL+KC C K + + +L G YH +CF C C +L
Sbjct: 6 TLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTL 44
Score = 33.9 bits (74), Expect = 0.25
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 351 TLEKCCVCRKII--LDRILRATGKPYHPTCFSCVECG 385
T +KC C+K + L+++ G+ YH TCF C G
Sbjct: 102 TQDKCATCKKTVYPLEKVTME-GESYHKTCFRCTHSG 137
Score = 33.1 bits (72), Expect = 0.43
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 310 TAMGNTYHVHCFTCQRCNVNLQGKPFYDVENEPYCEADY 348
T GNTYH CF C C L + ++ YC+ +
Sbjct: 24 TLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKPHF 62
>At2g32840.2 68415.m04021 proline-rich family protein Common family
member: At1g04930 [Arabidopsis thaliana]
Length = 291
Score = 34.7 bits (76), Expect = 0.14
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 154 PLPNPSSGVHQEYMMPVLSKSPVTTNSEEYMPPPSPVSSNYSELARANANLNYNHDRTCP 213
P PNPS V + S+SPVT + P P + RA A L+ +H
Sbjct: 10 PNPNPSVSVAVSTPIVTASESPVTQPNTVITPSSQPQPQTPASSYRAIAPLHRHHPH--Q 67
Query: 214 PVYQNNFPEYNMSQAPTYESFYEPISPHPSS 244
+Y N P S + T S ++P P PSS
Sbjct: 68 NIYTNPLP-IRRSNSVT-NSPHQPPHPDPSS 96
>At2g32840.1 68415.m04020 proline-rich family protein Common family
member: At1g04930 [Arabidopsis thaliana]
Length = 337
Score = 34.7 bits (76), Expect = 0.14
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 154 PLPNPSSGVHQEYMMPVLSKSPVTTNSEEYMPPPSPVSSNYSELARANANLNYNHDRTCP 213
P PNPS V + S+SPVT + P P + RA A L+ +H
Sbjct: 10 PNPNPSVSVAVSTPIVTASESPVTQPNTVITPSSQPQPQTPASSYRAIAPLHRHHPH--Q 67
Query: 214 PVYQNNFPEYNMSQAPTYESFYEPISPHPSS 244
+Y N P S + T S ++P P PSS
Sbjct: 68 NIYTNPLP-IRRSNSVT-NSPHQPPHPDPSS 96
>At2g39900.1 68415.m04904 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 200
Score = 34.3 bits (75), Expect = 0.19
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 351 TLEKCCVCRKIILD-RILRATGKPYHPTCFSCVECGKSL 388
T +KC C K + +L A G YH CF C C L
Sbjct: 6 TQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRL 44
Score = 32.3 bits (70), Expect = 0.75
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 310 TAMGNTYHVHCFTCQRCNVNLQGKPFYDVENEPYCEADY 348
+A G +YH CF C C LQ + +E YC +
Sbjct: 24 SADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRPHF 62
>At4g36860.1 68417.m05226 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 351
Score = 33.5 bits (73), Expect = 0.33
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 312 MGNTYHVHCFTCQRCNVNLQGKPFYDVENEPYCEADYYDTLE-KCCVCRKII 362
MG +H CF C C+ + F N PY + Y + KC VC I
Sbjct: 1 MGGVWHPECFCCNACDKPIIDYEFSMSGNRPYHKLCYKEQHHPKCDVCHNFI 52
Score = 32.7 bits (71), Expect = 0.57
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 371 GKPYHPTCFSCVECGKSLDGIPFTVDAMNQIHCIDDFHKKFAPRCCVC 418
G +HP CF C C K + F++ H + + ++ P+C VC
Sbjct: 2 GGVWHPECFCCNACDKPIIDYEFSMSGNRPYHKL-CYKEQHHPKCDVC 48
>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
similarity to Pfam profile PF00412: LIM domain
Length = 702
Score = 32.7 bits (71), Expect = 0.57
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 316 YHVHCFTCQRCNVNLQG-KPFYDVENEPYCEADYYDTLEKCCVCRKIILDRILRATGKPY 374
Y +C+ C+ + PF++ E YC D KCC C + L+ GK
Sbjct: 402 YERYCYVCKEKKMKTYNIHPFWE---ERYCPVHEADGTPKCCSCER--LEPRGTKYGK-L 455
Query: 375 HPTCFSCVECGKS 387
+ C+ECGKS
Sbjct: 456 SDGRWLCLECGKS 468
>At5g62640.1 68418.m07862 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 520
Score = 31.9 bits (69), Expect = 0.99
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
Query: 183 YMPPPSPVSSNYSELARANANLNYNHDRTCPPVYQNNFPEYNMSQAPTYESFYEPISPHP 242
Y PPP P L ++ + Y N P + S APT P++ H
Sbjct: 382 YGPPPGPPPMMRPPLPPGPPPSSFQDGQAMIRPYVPNKPSFVKSAAPTVVR--RPLAQHT 439
Query: 243 SSKTAMQENNLITKKEALSKRSPLPKEQEVDALT 276
T+M ++ ++E+ + P PK +L+
Sbjct: 440 PELTSMVPASVRVRRESATVTKPKPKTSIASSLS 473
>At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 489
Score = 31.5 bits (68), Expect = 1.3
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 11/101 (10%)
Query: 153 LPLPNPSSGVHQEYMMPVLSKSPVTTNSEEYMPPPSPVSS---NYSELARANANLNYNHD 209
+P P+P+S +Y + P Y P PSP SS YS+ A+A N+
Sbjct: 53 VPAPSPASSYGPQYSQEGYASQPNNPPPPTYAPAPSPASSYGHQYSQEGYASAASQPNYP 112
Query: 210 RTCPPVYQNNFPEYNMSQAPTYESFYEPISPHPSSKTAMQE 250
PP Q+ ++ ++ Y IS + SS + E
Sbjct: 113 ---PPPSQS-----QVADRKKFDRRYSKISDNYSSLLQVSE 145
>At1g10200.1 68414.m01150 transcription factor LIM, putative strong
similarity to transcription factor Ntlim1 [Nicotiana
tabacum] GI:5689136, LIM domain protein WLIM-1
[Helianthus annuus] GI:5070280; contains Pfam profile
PF00412: LIM domain
Length = 190
Score = 31.5 bits (68), Expect = 1.3
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 351 TLEKCCVCRKII--LDRILRATGKPYHPTCFSCVECGKSL 388
T +KC C K + +D+ L A + YH CF C C +L
Sbjct: 6 TTQKCMACDKTVYLVDK-LTADNRVYHKACFRCHHCKGTL 44
Score = 29.1 bits (62), Expect = 7.0
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 310 TAMGNTYHVHCFTCQRCNVNLQGKPFYDVENEPYCEADY 348
TA YH CF C C L+ + E YC +
Sbjct: 24 TADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHF 62
>At5g24370.1 68418.m02873 invertase/pectin methylesterase inhibitor
family protein contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 191
Score = 30.7 bits (66), Expect = 2.3
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 252 NLITKKEALSKRSPLPKEQEVDALTNLLVQSITDSQDLDVFGIC-VKCGERISGENAGCT 310
N+ T E ++KR+ + V + + L+ + TD+QD VF C + +S + T
Sbjct: 65 NIATITEVMTKRALTFATETVSQIQDYLLPNATDTQDKAVFSACEIAYKAVVSRLQSAYT 124
Query: 311 AMGNTYHV 318
+M N+ +V
Sbjct: 125 SMKNSDYV 132
>At2g38410.1 68415.m04718 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate HRS
isoform 2 [Homo sapiens] GI:9022389; contains Pfam
profiles PF00790: VHS domain, PF03127: GAT domain
Length = 671
Score = 30.7 bits (66), Expect = 2.3
Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 150 YMTLPLPNPSSGVHQEYMMPVLSKSPVTTNSEEYMPPPSP---VSSNYSELARANANLNY 206
Y L P P G Q + P T Y PP P S+N RANA+ +Y
Sbjct: 521 YSQLQQPQPQQGYSQSQPQAQVQMQPSTRPQNPYEYPPPPWASTSANAYYTPRANASASY 580
>At1g77250.1 68414.m08997 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 522
Score = 30.7 bits (66), Expect = 2.3
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 284 TDSQDLDVFGICVKCGERISGENAGCTAMGNTYHVHCFT----CQRCNVNLQGKPFYDVE 339
TD++ +D C K S EN+ C +HV C+ C + Y
Sbjct: 313 TDNRSVDTSTEC-KEDSNESEENSSCNMNHEVHHVEMSRDSELCRTCGTKVDSGGKYITC 371
Query: 340 NEPYCEADYYDTLEKCCVCRKIIL 363
+ P+C YY +C R+I L
Sbjct: 372 DHPFCPHKYYHI--RCLTSRQIKL 393
>At2g25380.1 68415.m03039 zinc finger protein-related very low
similarity to SP|O95376 Ariadne-2 protein homolog
(ARI-2) (Triad1 protein) {Homo sapiens}; contains Pfam
profile PF01485: IBR (In Between Ring fingers) domain
Length = 350
Score = 30.3 bits (65), Expect = 3.0
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 353 EKCCVC-RKIILDRILRATGKPYHPTCFSCVE--CGK--SLDGIPFTVDAMNQIHCIDDF 407
E C +C + + DR+ T K H CFSCV+ C K L I V + + + C D
Sbjct: 198 ETCVICLEETVADRMF-FTDKCLHRYCFSCVKQTCVKCNGLFCIDCKVPSHSDLSCAD-- 254
Query: 408 HKKFAPRCCVCELPI 422
+KK P V ++ +
Sbjct: 255 YKKLHPELLVDDIKL 269
>At5g66620.1 68418.m08397 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 644
Score = 29.9 bits (64), Expect = 4.0
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 316 YHVHCFTCQRCNVNLQGK-PFYDVENEPYCEADYYDTLEKCCVCRKI 361
Y +C+ C+ + PF++ E YC D KCC C ++
Sbjct: 341 YERYCYVCKEKKMKTYNNHPFWE---ERYCPVHEADGTPKCCSCERL 384
>At5g16910.1 68418.m01982 cellulose synthase family protein similar
to gi:2827143 cellulose synthase catalytic subunit,
Arabidopsis thaliana, gi:9622886 cellulose synthase-7
from Zea mays
Length = 1145
Score = 29.9 bits (64), Expect = 4.0
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 172 SKSPVTTNSEEYMP--PPSPVSSNYSELARANANLNYNHDRTCPPVYQNNFPEYNMSQAP 229
S+S ++ NS+ P PP+ S +++ + +NY+ D + +F Y + P
Sbjct: 10 SRSNLSNNSDIQEPGRPPAGHSVKFAQRTSSGRYINYSRDDLDSELGGQDFMSYTVHIPP 69
Query: 230 TYESFYEPISPHPSSKTAMQ 249
T ++ +P+ P S K Q
Sbjct: 70 TPDN--QPMDPSISQKVEEQ 87
>At3g45840.1 68416.m04961 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 633
Score = 29.9 bits (64), Expect = 4.0
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 359 RKIILDR--ILRATGKPYHPTCFSCVECGKSLDGIPF-TVDAMNQIHC 403
R +I +R L A GK FSC CGK G + + D M +HC
Sbjct: 366 RHLIYNRPFTLHARGKDLQIDWFSCDACGKQSTGFRYISDDLMLDVHC 413
>At2g21830.1 68415.m02594 DC1 domain-containing protein contains
Pfam profilePF03107: DC1 domain
Length = 569
Score = 29.9 bits (64), Expect = 4.0
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 294 ICVKCGERISGENAGCTAMGNTYHVHCFTCQR 325
+C+ C ER+ G+ C YH+ C R
Sbjct: 531 VCIICHERVLGKAVSCMECETIYHLRCIDRHR 562
>At1g55540.1 68414.m06356 proline-rich family protein contains
proline rich extensin domain, INTERPRO:IPR002965
Length = 915
Score = 29.9 bits (64), Expect = 4.0
Identities = 33/129 (25%), Positives = 49/129 (37%), Gaps = 13/129 (10%)
Query: 154 PLPNPSSGVHQEYMMPVLSKSPV-----TTNSEEYMPPPSPVSSNYSELARANANLNYNH 208
P P P++G + +P LS S +T PP +P S S+ A A ++L +
Sbjct: 424 PSPGPTAGF--TFNLPALSPSSPEMVSSSTGQSSLFPPSAPTSQVSSDQASATSSLT-DS 480
Query: 209 DRTCPPVYQNNFPEYNMSQAPTYESFYEPISPHPSSKTAMQENNLITKKEALSKRSPLPK 268
R ++ P A F P PSS + E KK S L
Sbjct: 481 SRLFSSTSLSSTPPITPPDA-----FQSPQVSTPSSAVPITEPVSEPKKPEAQSSSILST 535
Query: 269 EQEVDALTN 277
+ VD++ N
Sbjct: 536 QSTVDSVAN 544
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 29.5 bits (63), Expect = 5.3
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Query: 154 PLPNPSSGVHQEYMMPVLSKSPVTTNSEEYMPPPSPVSSNYSELARANANLNYNHDRTCP 213
P P P + P + SP + Y PPP P ++YS + YN P
Sbjct: 737 PPPTPIHSPPPQSHPPCIEYSPPPPPTVHYNPPPPPSPAHYSP-PPSPPVYYYNSPPPPP 795
Query: 214 PVYQNNFPE--YNMSQAPTYESFYEPISPHP 242
V+ + P + SQ P + P+ P P
Sbjct: 796 AVHYSPPPPPVIHHSQPPPPPIYEGPLPPIP 826
>At3g60300.1 68416.m06740 RWD domain-containing protein contains
weak similarity to RING finger protein 25 (RING finger
protein AO7) (Swiss-Prot:Q9QZR0) [Mus musculus]
Length = 366
Score = 29.5 bits (63), Expect = 5.3
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 415 CCVCELPIMPEEGQEETVRVVALDRSFHVKCYRCE 449
C +C P+ PE+G + + + L FH C+ CE
Sbjct: 121 CPLCLYPLFPEDGGSKQMPFMKLMSCFH--CFHCE 153
>At3g42670.1 68416.m04437 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|P41410
DNA repair protein rhp54 (RAD54 homolog)
{Schizosaccharomyces pombe}; contains PFam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1256
Score = 29.5 bits (63), Expect = 5.3
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 150 YMTLPLPNPSSGVHQEYMMPVLSKSPVTTNSEEYMPPPSPVSSNYSELARANANLNYNHD 209
++TL + S H++YM VL +SP +E P S S L + + +L
Sbjct: 819 FLTL-MREDSKFAHRKYMAKVLRESPGLLVLDEGHNPRSTKSRLRKALMKVDTDLRILLS 877
Query: 210 RTCPPVYQNNFPEY 223
T ++QNNF EY
Sbjct: 878 GT---LFQNNFCEY 888
>At1g79480.1 68414.m09263 hypothetical protein low similarity to
beta-1,3-glucanase-like protein GI:9758115 from
[Arabidopsis thaliana]
Length = 356
Score = 29.5 bits (63), Expect = 5.3
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Query: 169 PVLSKSPVTTNSEEYMPPPSPVSSNYSELARANANLNYNHDRTCPPVYQNNFPEYNMSQA 228
P+ +P ++S P P SS+ +++N N N + PPV N PE + +
Sbjct: 83 PITLPNPPDSSSNPNSNPNPPESSSNPNPPDSSSNPNSNPN---PPVTVPNPPESSSNPN 139
Query: 229 PTYESFYEPISPHPSSKTAMQENNLITKKEALSKRSPLPKE 269
P S +P+P ++ + S +P P E
Sbjct: 140 PPDSSSNPNSNPNPPESSSNPNPPVTVPNPPESSSNPNPPE 180
>At1g68880.1 68414.m07883 bZIP transcription factor family protein
similar to common plant regulatory factor 6 GI:9650826
from [Petroselinum crispum]; contains Pfam profile:
PF00170 bZIP transcription factor
Length = 138
Score = 29.5 bits (63), Expect = 5.3
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 13/100 (13%)
Query: 219 NFPEYNMSQAPTYESFYE--PISPHP-----SSKTA----MQENNLITKKEALSKRSPLP 267
N P N + ++ F + P+S P SS+TA + ++ +E+ ++RS +
Sbjct: 7 NLPSQNPNPQSLFQIFVDRVPLSNLPATSDDSSRTAEDNERKRRRKVSNRES-ARRSRMR 65
Query: 268 KEQEVDALTNLLVQSITDSQDL-DVFGICVKCGERISGEN 306
K++ ++ L ++LVQ I ++ L D +C E++ EN
Sbjct: 66 KQRHMEELWSMLVQLINKNKSLVDELSQARECYEKVIEEN 105
>At5g14540.1 68418.m01704 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 547
Score = 29.1 bits (62), Expect = 7.0
Identities = 24/91 (26%), Positives = 30/91 (32%), Gaps = 4/91 (4%)
Query: 151 MTLP-LPNPSSGVHQEYMMPVLSKSPVTTNSEEYMPPPSPVSSNYSELARANANLNYNHD 209
+ LP LPN S + Y P P T Y PPP S + Y
Sbjct: 281 LQLPQLPNQFSPQQEPYFPPSGQSQPPPTIQPPYQPPPPTQSLHQPPYQPPPQQPQYPQQ 340
Query: 210 RTCPPVYQNNFPEYNMSQAPTYESFYEPISP 240
PP + YN + P + Y P P
Sbjct: 341 ---PPPQLQHPSGYNPEEPPYPQQSYPPNPP 368
>At4g38870.1 68417.m05504 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 426
Score = 29.1 bits (62), Expect = 7.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 296 VKCGERISGENAGCTAMGNTYHVHCFTCQRCNVN 329
+K IS ++ +A TYHV C+T QR ++
Sbjct: 122 LKSTREISSSSSSSSASSITYHVTCYTQQRMTIS 155
>At3g62670.1 68416.m07040 two-component responsive regulator family
protein / response regulator family protein contains
Pfam profile: PF00072 response regulator receiver domain
Length = 426
Score = 29.1 bits (62), Expect = 7.0
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 163 HQEYMMPVLSKSPVTTNSEEYMPPPSPVSSNYSELARANANLNYNHDRTCPPVYQNNFPE 222
HQ+Y + S S + T E P S + N L N+NL + D PP N F +
Sbjct: 364 HQQYQSTLNSISAMLTKQESRHVPSSAME-NSEPLMIYNSNLPFGIDECFPPAGFNIFDQ 422
>At3g57480.1 68416.m06399 zinc finger (C2H2 type, AN1-like) family
protein contains Pfam domain, PF00096: Zinc finger, C2H2
type; contains Pfam domain, PF01428: AN1-like Zinc
finger
Length = 249
Score = 29.1 bits (62), Expect = 7.0
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 382 VECGKSLDGIPFTVDAMNQIHCIDDFHKKFAPRCC 416
V+ K +D +PFT D Q++C+D H+ + C
Sbjct: 15 VDYCKQIDFLPFTCDRCLQVYCLD--HRSYMKHDC 47
>At2g41835.1 68415.m05170 zinc finger (C2H2 type, AN1-like) family
protein contains Pfam domain, PF00096: Zinc finger, C2H2
type; contains Pfam domain, PF01428: AN1-like Zinc
finger
Length = 279
Score = 29.1 bits (62), Expect = 7.0
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 382 VECGKSLDGIPFTVDAMNQIHCIDDFHKKFAPRCC 416
V+ K +D +PFT D Q+ C+D H+ + C
Sbjct: 15 VDVCKQIDFLPFTCDRCLQVFCLD--HRSYMKHSC 47
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 28.7 bits (61), Expect = 9.3
Identities = 26/123 (21%), Positives = 45/123 (36%)
Query: 154 PLPNPSSGVHQEYMMPVLSKSPVTTNSEEYMPPPSPVSSNYSELARANANLNYNHDRTCP 213
P P S H P S + ++S + P SP + A A ++ + P
Sbjct: 214 PSPVSHSPSHSPAHTPSHSPAHTPSHSPAHAPSHSPAHAPSHSPAHAPSHSPAHSPSHSP 273
Query: 214 PVYQNNFPEYNMSQAPTYESFYEPISPHPSSKTAMQENNLITKKEALSKRSPLPKEQEVD 273
++ P + +Q+P S P SP P S + ++ + + SP D
Sbjct: 274 ATPKSPSPSSSPAQSPATPSPMTPQSPSPVSSPSPDQSAAPSDQSTPLAPSPSETTPTAD 333
Query: 274 ALT 276
+T
Sbjct: 334 NIT 336
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 28.7 bits (61), Expect = 9.3
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 172 SKSPVTTNSEEYMPPPSPVSSNYSELARANANLNYNHDRTCPPVYQNNFPEY---NMSQA 228
S SP + + P SP S +YS + A + + + T P Y P Y + S +
Sbjct: 1614 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPT-SPAYSPTSPSYSPTSPSYS 1672
Query: 229 PTYESFYEPISP 240
PT S Y P SP
Sbjct: 1673 PTSPS-YSPTSP 1683
>At3g48980.1 68416.m05350 expressed protein
Length = 539
Score = 28.7 bits (61), Expect = 9.3
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 158 PSSGVHQEYMMPVLSKSPVTTNSEEYMPPPSPVSSNYSELAR 199
P G +++MM L K P T MPPP +S YS L R
Sbjct: 475 PRDGNERKFMMESLVKRPAETGPCA-MPPPYDPASFYSVLKR 515
>At3g13840.1 68416.m01747 scarecrow transcription factor family
protein
Length = 510
Score = 28.7 bits (61), Expect = 9.3
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 222 EYNMSQAPTYESFYEPISPHPSSKTAMQENNLITKKEALSKRSPLPKEQEVDALTNLLVQ 281
++++S + SF+ P+ S++ M + L+ E +S LP A+ +L Q
Sbjct: 194 QHHLSSSSVSSSFW-PVFTFASAEVKMFQKTLLKFYE-VSPWFALPNNMANSAILQILAQ 251
Query: 282 SITDSQDLDVFGICVKCG 299
D +DL + I V G
Sbjct: 252 DPKDKKDLHIIDIGVSHG 269
>At2g20240.1 68415.m02365 expressed protein
Length = 713
Score = 28.7 bits (61), Expect = 9.3
Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 220 FPEYNMSQAPTYESFYEPISPHPSSK--TAMQENNLITKKEALSK--RSPLPKEQE---V 272
F + + S P + S ++P+ PHP +K T ++ + + ++ L++ + P QE +
Sbjct: 144 FLQESNSLFPQHLSDFQPVPPHPDAKRITVLRPSKAVGVQKCLAEDSKKPASLNQETGWI 203
Query: 273 DAL--TNLLVQSITDSQDLDVFGI 294
DA+ T ++V + + LD+ I
Sbjct: 204 DAVQPTRIVVLKPSPGKSLDIKAI 227
>At1g53260.1 68414.m06035 hypothetical protein low similarity to
SP|Q38732 DAG protein, chloroplast precursor
{Antirrhinum majus}
Length = 358
Score = 28.7 bits (61), Expect = 9.3
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 158 PSSGVHQEYMMPVLSKSPVTTNSEEYMPPPSPVSSNYSELARANANLNYNHDRTCPP 214
P ++Q Y P P N PPPS + NY + N++ N++ PP
Sbjct: 269 PPPNMNQSYQGP----PPPNMNQSYQGPPPSNMGQNYRGPSLPPPNMSQNYEGPPPP 321
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.132 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,191,040
Number of Sequences: 28952
Number of extensions: 501470
Number of successful extensions: 1682
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1609
Number of HSP's gapped (non-prelim): 98
length of query: 492
length of database: 12,070,560
effective HSP length: 84
effective length of query: 408
effective length of database: 9,638,592
effective search space: 3932545536
effective search space used: 3932545536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
- SilkBase 1999-2023 -