BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001884-TA|BGIBMGA001884-PA|IPR001005|Myb, DNA-binding, IPR009057|Homeodomain-like (486 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 55 3e-08 SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 36 0.013 SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 33 0.089 SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 33 0.089 SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 31 0.48 SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 30 0.63 SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 30 0.63 SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 29 1.9 SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 28 2.5 SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 28 2.5 SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 28 2.5 SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp... 28 3.4 SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 28 3.4 SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 28 3.4 SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 28 3.4 SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 27 4.4 SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 4.4 SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 27 5.9 SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 27 5.9 SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 27 7.8 SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 27 7.8 >SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 507 Score = 54.8 bits (126), Expect = 3e-08 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 5/106 (4%) Query: 121 NGEIILDEQSLVIKQSNNGRKVSSE---VREGAWNER--SSGYRRSARTADWTHDETVRF 175 NG+I+LDE SL + + + E V E + + R S+ + + W +T +F Sbjct: 317 NGQIVLDETSLEVDRHERDFVPAEEREYVEENSLSRRVTSATWGNRQKPEKWNAMDTEKF 376 Query: 176 YRALAAIGTDFTLMEPLFPGRTRRDXXXXXXXXXXXNIAQVDKALR 221 Y+AL+ GTDF L+ +FP R RR N A+V++AL+ Sbjct: 377 YKALSQWGTDFALIANMFPTRNRRQIKLKFKQEERRNPARVNQALK 422 >SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 197 Score = 35.9 bits (79), Expect = 0.013 Identities = 18/51 (35%), Positives = 32/51 (62%) Query: 414 LPVDLPPSLLNSVVGYVRKETTDSNASMVSSPMTSASPNSVASMDSRISVT 464 +PVD+ PS +S TT S++ + S+ +TS+SP++V+S S S++ Sbjct: 104 IPVDIDPSSSSSSAASSTTSTTSSSSLVSSTTLTSSSPSAVSSTTSIPSIS 154 >SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosaccharomyces pombe|chr 2|||Manual Length = 658 Score = 33.1 bits (72), Expect = 0.089 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 9/92 (9%) Query: 394 PNSPTKKMLQTYIAREKGKLLPVDLPPSLLNS--VVGYVRKETTDSNASMVSSPMTSA-S 450 P S T + Y +R P PP+ +S ++ +TT SNAS SP+ S+ S Sbjct: 241 PTSATSSSSRLYPSR------PAPTPPASSSSSPLLSSQTVKTTTSNASRQPSPLVSSKS 294 Query: 451 PNSVASMDSRISVTPLQVNPSPNKRQRKNSYT 482 +++ S + +TP ++ S K R N+ T Sbjct: 295 TDNIIRSHSPVLLTPQTLSTSETKHIRPNNST 326 >SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 615 Score = 33.1 bits (72), Expect = 0.089 Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 16/154 (10%) Query: 329 STSSLATLSVRNNRKTQESKNSVSDMAVITKIDPKPANMLLDNISNPSMPSNIETGSLVV 388 S S A+ S + + N V ++ +P+P + D P ET + V Sbjct: 362 SQPSAASSSSSSEPSNLDKINDVKKNIEVSANEPQPRPVKEDV---PKSQVGGETDTTDV 418 Query: 389 LTVNDPNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSNASMVSSPMTS 448 + + P T++ T + E GK + PP+ V T S A+ S+P S Sbjct: 419 INNSTPKEETEESPSTELP-ETGK----EQPPNKAEPAVPTEASSTKPSEAAEESTPRFS 473 Query: 449 ASPNS--------VASMDSRISVTPLQVNPSPNK 474 PN VA+++SR+ PL + PNK Sbjct: 474 VRPNKFTGSRAGFVAALESRLQKGPLMRSFVPNK 507 >SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |Schizosaccharomyces pombe|chr 2|||Manual Length = 517 Score = 30.7 bits (66), Expect = 0.48 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%) Query: 341 NRKTQESKNSVSDMAVITKIDPKPANM---LLDNISNPSMP-SNIETGSLVVLTVNDPNS 396 N T S +S + A ++ +P+N L NI P +P SN+++ S V PN+ Sbjct: 212 NSSTSTSGSSSNVAAEVSNDASQPSNQDSSLNSNIVKPPLPPSNVQSNSSSSENVPKPNA 271 Query: 397 PTKKMLQTYIARE 409 T++ L T A E Sbjct: 272 ETQEDLPTIDAHE 284 >SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 1036 Score = 30.3 bits (65), Expect = 0.63 Identities = 30/143 (20%), Positives = 58/143 (40%), Gaps = 3/143 (2%) Query: 329 STSSLATLSVRNNRKTQESKNSVSDMAVITKIDPKPANMLLDNISNPSMPSNIETGSLVV 388 ++SS+ + S+ ++ T S S S + + A ++S+ + ++ + SL Sbjct: 140 ASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATS--SSLSSTAASNSATSSSLAS 197 Query: 389 LTVNDPNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSNASMVSSPMTS 448 ++N S T L S LNS ++ S+ S+P+TS Sbjct: 198 SSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTS 257 Query: 449 ASPNSVASMDSRISVTPLQVNPS 471 ++ + A+ S S + Q N S Sbjct: 258 SNSTTAATSASATS-SSAQYNTS 279 >SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosaccharomyces pombe|chr 1|||Manual Length = 487 Score = 30.3 bits (65), Expect = 0.63 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 3/75 (4%) Query: 409 EKGKLLPVDLPPSLLNSVVGYVRKETTDSNASMVSSPMTSASP---NSVASMDSRISVTP 465 E+ P +LP L+N++ KE ++ + + P +S+S V ++ S++ P Sbjct: 137 EREHTSPPELPTKLVNTIEKLKVKEENEAPPVIPAKPFSSSSEQHFRKVPALPSKLPPKP 196 Query: 466 LQVNPSPNKRQRKNS 480 L++ + + Q NS Sbjct: 197 LKITANSSLGQETNS 211 >SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosaccharomyces pombe|chr 3|||Manual Length = 877 Score = 28.7 bits (61), Expect = 1.9 Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 14/120 (11%) Query: 363 KPANMLLDNISNPSMPSNIETGSLVVLTVNDPNSPTKKMLQTYIAREKGKL--LPVDLPP 420 +P + D+ +PS PSN +T S + N+PT I EK + L D PP Sbjct: 414 RPHSSSTDSPPSPSTPSNTQTDSYF---IQRENTPTNHNSIPTIQLEKSSMDFLRFDPPP 470 Query: 421 SLLNSVVGYVRKETTDSNASMVSSPMTSASPNSVA-SMDSRISVTPLQVNPSPNKRQRKN 479 S + + Y ++ + A N+V+ MD R PSP K + N Sbjct: 471 SAVKTSHNYGLPFLSNQRCPATPTRNPFAFENTVSIHMDGR--------QPSPIKSRNNN 522 Score = 26.6 bits (56), Expect = 7.8 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 5/66 (7%) Query: 419 PPSLLNSVVGYVRKETTDSNASMVSSPMTSASPNSVASMDSRISVTPLQVNPS----PNK 474 P + S+ G RK+TT S + ++P+ SP S +I P+ PS PN Sbjct: 53 PNTSFTSLFG-PRKQTTSSPSFSHAAPLHPLSPPSFTHSQPQIQAQPVPRRPSLFDRPNL 111 Query: 475 RQRKNS 480 R +S Sbjct: 112 VSRSSS 117 >SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1210 Score = 28.3 bits (60), Expect = 2.5 Identities = 27/134 (20%), Positives = 60/134 (44%), Gaps = 3/134 (2%) Query: 351 VSDMAVITKIDPKPANMLLDNISNPSMPSNIETGSLVVLTVNDPNSPTKKMLQTYIAREK 410 ++DM + + K +N + ++ + S P+ T S+ +VN +K + + I + Sbjct: 194 ITDMPHLAPLQRKNSNASIHSLGSSSRPTLTRTPSITSRSVNSVTERSKSLSKGRIENQF 253 Query: 411 GK--LLPVDLPPSLLN-SVVGYVRKETTDSNASMVSSPMTSASPNSVASMDSRISVTPLQ 467 G+ LL +P +L + S + K T D +S + + +A + + + P Sbjct: 254 GQLYLLAGRVPNALKHFSTAIALSKATGDFLWQGLSLELFTVCLVIMAHLHVDVQIPPNI 313 Query: 468 VNPSPNKRQRKNSY 481 ++ P+ R N++ Sbjct: 314 LSMFPSYNDRLNAF 327 >SPBC25B2.07c |mug164||microtubule-associated protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 501 Score = 28.3 bits (60), Expect = 2.5 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%) Query: 348 KNSVSDMAVITKIDPKPANMLLDNISNPSMP---SNIETG-SLVVLTVNDPNSPTKKM 401 +NSV D + ID A++ NIS+PS+P S + G SL +++P S T + Sbjct: 38 ENSVMDTEESSAIDKLSASLQQVNISSPSVPTSQSRVTQGQSLGNTQISNPTSKTNNV 95 >SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosaccharomyces pombe|chr 1|||Manual Length = 834 Score = 28.3 bits (60), Expect = 2.5 Identities = 17/57 (29%), Positives = 27/57 (47%) Query: 333 LATLSVRNNRKTQESKNSVSDMAVITKIDPKPANMLLDNISNPSMPSNIETGSLVVL 389 L + V N++ ++ S S A++ D P + L +I N PSN SL+ L Sbjct: 741 LLIILVTKNKRRRKIFTSPSLQAMVVAQDEVPEGISLADIENKENPSNSNVYSLISL 797 >SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp9|Schizosaccharomyces pombe|chr 2|||Manual Length = 778 Score = 27.9 bits (59), Expect = 3.4 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 1/86 (1%) Query: 391 VNDPNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSNASMVSSPMTSAS 450 +ND N P + + +D S ++S+ R + +N ++ S S Sbjct: 276 INDENFPNPFNVISSYETSASPSTVID-QSSQVSSIFVNKRLRKSVNNQAISRSDSLSLD 334 Query: 451 PNSVASMDSRISVTPLQVNPSPNKRQ 476 + S+ +R S+ PL+ + SPN R+ Sbjct: 335 TPKIDSLFTRASIKPLKPSQSPNSRR 360 >SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 425 Score = 27.9 bits (59), Expect = 3.4 Identities = 16/71 (22%), Positives = 28/71 (39%) Query: 329 STSSLATLSVRNNRKTQESKNSVSDMAVITKIDPKPANMLLDNISNPSMPSNIETGSLVV 388 S S L +S N T +S + + T P P+ ++ P + E+ + Sbjct: 343 SPSQLDPISNENESDTDDSNTGLRNRTSPTAAPPPPSRRKTGGLNTRPYPQHAESQMSLP 402 Query: 389 LTVNDPNSPTK 399 LT + + P K Sbjct: 403 LTAKERSKPKK 413 >SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 841 Score = 27.9 bits (59), Expect = 3.4 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 6/74 (8%) Query: 413 LLPVDLPPSLLNSVVGYVRKETTDSNASMVSSPMTSASPNSVASMDSRISVTPLQVNPSP 472 +LP+D+P S+ ++ + S A V S + P SVA + S P + S Sbjct: 672 ILPIDVPKSVAEETYSFLPSDVPKSEAEKVYSILPIDVPQSVA--EETYSFKPSDIPES- 728 Query: 473 NKRQRKNSYTITPL 486 + + Y+I P+ Sbjct: 729 ---EAEKIYSILPI 739 >SPBC800.10c |||EPS15 repeat family actin cortical patch component |Schizosaccharomyces pombe|chr 2|||Manual Length = 1116 Score = 27.9 bits (59), Expect = 3.4 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%) Query: 411 GKLLPVDLPPSLLNSVVGYVRKETT--DSNASMVSSPMTSASPN 452 GK LP LP S+L+SV ++K + S S+V + ++S +PN Sbjct: 330 GKELPKVLPSSMLSSVAPLMQKSKSVPTSIPSVVPANISSPNPN 373 >SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Schizosaccharomyces pombe|chr 1|||Manual Length = 880 Score = 27.5 bits (58), Expect = 4.4 Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 5/107 (4%) Query: 379 SNIETGSLVVLTVNDPNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSN 438 ++I+ GSL V+ N N+P + + + +P D P + + D+N Sbjct: 235 ASIDNGSLSVVQNNARNNPVDFYIPSSFEESSFQTIPEDFEPQVHDHENQTQLNHHLDNN 294 Query: 439 ASMVSSPMTSASPN-----SVASMDSRISVTPLQVNPSPNKRQRKNS 480 +S+ S + + N +V+S +S S T + +P +NS Sbjct: 295 SSISSHNPSLETANDGNQETVSSSNSNYSTTRVDNDPHVASYSPQNS 341 >SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Schizosaccharomyces pombe|chr 1|||Manual Length = 1995 Score = 27.5 bits (58), Expect = 4.4 Identities = 20/93 (21%), Positives = 36/93 (38%) Query: 304 EFXXXXXXXXXXXXXXXXXXEPGPGSTSSLATLSVRNNRKTQESKNSVSDMAVITKIDPK 363 EF EPG S S V + R++ S S + V +I P+ Sbjct: 762 EFVSTSSYAPAANTRNAIIREPGILSPLSPRVQPVLSRRESIISMGSSASSYVPLEIAPR 821 Query: 364 PANMLLDNISNPSMPSNIETGSLVVLTVNDPNS 396 P + L +++ P N++ + + + PN+ Sbjct: 822 PMSSLEHTMNSAMSPGNLQRTANLYKPMTTPNA 854 >SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 772 Score = 27.1 bits (57), Expect = 5.9 Identities = 14/63 (22%), Positives = 36/63 (57%), Gaps = 5/63 (7%) Query: 335 TLSVRNNRKTQESKNSVSDMAVITKIDPKPANMLLDNISNPSMPS--NIETGSLVVLTVN 392 ++S +N+ + ++S+S + + ++ KP ++ + + PSMPS ++E G+++ Sbjct: 305 SVSTKNSSSNKNLRSSLSKLLSTSNLNNKPLSL---SSTAPSMPSIGSVELGNMIPKETQ 361 Query: 393 DPN 395 P+ Sbjct: 362 PPS 364 >SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 549 Score = 27.1 bits (57), Expect = 5.9 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 2/33 (6%) Query: 143 SSEVREGAWNERSSGYRRSARTADWTHDETVRF 175 SS+ + W++ S+G+R S+++ D H +T F Sbjct: 204 SSDSKSVGWDDNSTGFRESSKSLD--HTDTSMF 234 >SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizosaccharomyces pombe|chr 1|||Manual Length = 927 Score = 26.6 bits (56), Expect = 7.8 Identities = 12/50 (24%), Positives = 22/50 (44%) Query: 431 RKETTDSNASMVSSPMTSASPNSVASMDSRISVTPLQVNPSPNKRQRKNS 480 R T + + P+TS S + ++ + P + SP ++ KNS Sbjct: 403 RPSVTSPTFEVAARPLTSMDVRSSHNAETEVQAIPAATDISPEVKEGKNS 452 >SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces pombe|chr 2|||Manual Length = 1154 Score = 26.6 bits (56), Expect = 7.8 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 120 PNGE-IILDEQSLVIKQSNNGRKVSSEVREGAWNERSSGYRRSARTAD 166 PN E + ++ +L + QS+ +K + W E G+R+S D Sbjct: 1091 PNTENVYINSYNLWVDQSSQSKKQNRTTNWRRWLESDEGWRKSKANTD 1138 Database: spombe Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.310 0.125 0.347 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,574,537 Number of Sequences: 5004 Number of extensions: 54290 Number of successful extensions: 215 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 192 Number of HSP's gapped (non-prelim): 29 length of query: 486 length of database: 2,362,478 effective HSP length: 75 effective length of query: 411 effective length of database: 1,987,178 effective search space: 816730158 effective search space used: 816730158 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 42 (21.8 bits) S2: 56 (26.6 bits)
- SilkBase 1999-2023 -