Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001884-TA|BGIBMGA001884-PA|IPR001005|Myb, DNA-binding,
IPR009057|Homeodomain-like
         (486 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)                 49   7e-06
SB_53796| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.39 
SB_56860| Best HMM Match : Cadherin (HMM E-Value=4.4e-16)              31   1.6  
SB_32684| Best HMM Match : Extensin_2 (HMM E-Value=0.96)               31   1.6  
SB_37123| Best HMM Match : Extensin_2 (HMM E-Value=1.5)                31   2.1  
SB_29939| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.1  
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)                    31   2.7  
SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.6  
SB_57119| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.4e-20)        30   4.8  
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.8  
SB_27527| Best HMM Match : MFAP1_C (HMM E-Value=0.57)                  30   4.8  
SB_23651| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  

>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
          Length = 1152

 Score = 49.2 bits (112), Expect = 7e-06
 Identities = 22/50 (44%), Positives = 33/50 (66%)

Query: 172 TVRFYRALAAIGTDFTLMEPLFPGRTRRDXXXXXXXXXXXNIAQVDKALR 221
           T++FY+AL+ +GTDF+LM PLFP RTR++           +   +DKAL+
Sbjct: 2   TLKFYKALSQVGTDFSLMMPLFPKRTRKELKAKFKREEKLHRDIIDKALQ 51


>SB_53796| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 33.5 bits (73), Expect = 0.39
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 326 GPGSTSSLATLSVRNNRKTQESKNSVSDMAVITKIDPKPANMLLDNISNPSMP 378
           GP  TSS ATL+  N    +   +S S     TKI P P+  L  + S PS+P
Sbjct: 80  GPRPTSSSATLTSANTMVHEPEASSRSPKTFTTKI-PTPSKSLATSSSVPSLP 131


>SB_56860| Best HMM Match : Cadherin (HMM E-Value=4.4e-16)
          Length = 748

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 5/47 (10%)

Query: 353 DMAVITK-IDPKPANMLLDNISNPSMPSNIETGSLV-VLTVNDPNSP 397
           D  +I K ++  P ++ L   +N S+P N  TG+LV  LT  DP SP
Sbjct: 642 DFVIIVKDVNEAPTSITL---TNKSIPENSPTGTLVGTLTCEDPESP 685


>SB_32684| Best HMM Match : Extensin_2 (HMM E-Value=0.96)
          Length = 201

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 6/105 (5%)

Query: 372 ISNPSMPSNIETGSLVVLTVNDPNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVR 431
           +++P +  N  T  +V  T    NSP   +  T +       +   LPP ++NS    V 
Sbjct: 65  VNSPPLMVN-STPLMVNSTPPMVNSPPLMVNSTPLRVNSTPQMVDSLPP-IVNSPPPMVN 122

Query: 432 KETTDSNAS--MVSS--PMTSASPNSVASMDSRISVTPLQVNPSP 472
                 N++  MV+S  PM ++ P  V S   R++ TPL VN +P
Sbjct: 123 SPPLMVNSTPLMVNSTPPMVNSPPLMVNSTPLRVNSTPLMVNSTP 167



 Score = 31.5 bits (68), Expect = 1.6
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 416 VDLPPSLLNSVVGYVRKET--TDSNASMVSSP--MTSASPNSVASMDSRISVTPLQVNPS 471
           V+ PP ++NS    V       +S   MV+SP  M +++P  V S    ++ TPL+VN +
Sbjct: 114 VNSPPPMVNSPPLMVNSTPLMVNSTPPMVNSPPLMVNSTPLRVNSTPLMVNSTPLRVNST 173

Query: 472 P 472
           P
Sbjct: 174 P 174


>SB_37123| Best HMM Match : Extensin_2 (HMM E-Value=1.5)
          Length = 318

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 4/110 (3%)

Query: 344 TQESKNSVSDMAVITKIDPKPANMLLDNISNPSMPSNIETGSLVVLTVNDPNSPTKKMLQ 403
           TQ   NS S +     I   P N   DN+S P   +   + S +  T ++P+SP   + Q
Sbjct: 181 TQTQDNSSSPLTQTQDISSSPLNQTWDNLSCPLTQTWDNSSSPLTQTWDNPSSP---LTQ 237

Query: 404 TYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSNASMVSSPMTSASPNS 453
           T+           D+  S LN          T +     SSP+T    NS
Sbjct: 238 TWDNSSSSLTRTRDISSSPLNQTWDNSISPLTQT-WDNPSSPLTQTWDNS 286


>SB_29939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 8/88 (9%)

Query: 325 PGPGSTSSLATLSVRNNRKTQESKNSVSDMAVITKIDPK-PANMLLDNI-----SNPSMP 378
           P   S S    L+  N R    S +S+S   V T  +P+ P++  L        +NP  P
Sbjct: 800 PSSSSLSRFIVLTSANPR--YPSSSSLSRFIVYTSANPRYPSSFSLSRFIVHTSANPRHP 857

Query: 379 SNIETGSLVVLTVNDPNSPTKKMLQTYI 406
           S+     L+V T   P  P+   L  +I
Sbjct: 858 SSSSLSRLIVYTSAKPRYPSSSSLSRFI 885


>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
          Length = 1952

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 6/151 (3%)

Query: 325 PGPGSTSSLATLSVRNNRKTQESKNSVSDMAVITKIDPKPANMLLDNISNPSMPSNIETG 384
           P P  T+S   +++  N  T       S +   T I P P           ++  N  T 
Sbjct: 268 PSPNETTSSMYVTIAVNSTTSSYSFETSAVNATTTISPSPNG--TTTAVYETLTLNATTS 325

Query: 385 SLVVLTVNDPNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVRK--ETTDSNASMV 442
           S    TV    +PT  +          + + V+   S+  S  G      ET   N++  
Sbjct: 326 SSTYATVAVNATPTISLSLNGTTSSVYETIAVNSTSSISPSPNGTTSSVYETITVNSTSS 385

Query: 443 SSPMTSASPNSVASMDSRISVTPLQVNPSPN 473
            SP  + + +SV    + ++ TP  ++PSPN
Sbjct: 386 ISPSPNGTTSSVYETIA-VNSTP-SISPSPN 414


>SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 286

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 434 TTDSNASMVSSPMTSASPNSVASMDSRISVTPLQVNPSPN-KRQRKNSYTITP 485
           TT  NA+  +   T+ +PN+  +  +  + TP     +PN      N+ T TP
Sbjct: 150 TTSPNATTTTPNTTTTTPNTTTTTPTATTTTPTATTTTPNTTTNTPNATTTTP 202


>SB_57119| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.4e-20)
          Length = 1423

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 4/97 (4%)

Query: 327 PGSTSSLATLSVRNNRKTQE--SKNSVSDMAVITKIDPKPANMLLDNISNPSMPSNIETG 384
           P S     +++V NNR  ++  SK S   ++ IT I PK    + +    P + +  +  
Sbjct: 681 PNSKQVPISITVNNNRDAKKIWSKESNLSLSDITDIQPKTPVFVKEEF--PDLSNTKQGE 738

Query: 385 SLVVLTVNDPNSPTKKMLQTYIAREKGKLLPVDLPPS 421
           +   LT +  +  T+  + +Y A  K K  P  LP S
Sbjct: 739 NQSTLTSDWLSGGTRMPILSYSAALKTKPQPRQLPDS 775


>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 7/144 (4%)

Query: 327 PGSTSSLATLSVRNNRKTQESKNSVSDMAV-ITKIDPK-PANMLLDNI-SNPSMPSNIET 383
           P + S  +T S+ N   T  + ++ S ++  IT   P  P+     ++ S PS PS   T
Sbjct: 210 PSTLSMPSTPSMPNTPSTPSTPSTPSTLSTPITPSTPSTPSTPSTPSMPSTPSTPSTPST 269

Query: 384 GSLVVLTVNDPNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSNASMVS 443
            S    T N P++P+   + +  +       P    PS   S        +T S  S   
Sbjct: 270 PS-TPCTPNTPSTPSTPSMPSTPSTPSTPSTPST--PST-PSAPSTPSTPSTPSTPSTPK 325

Query: 444 SPMTSASPNSVASMDSRISVTPLQ 467
           +P T  +PN+ ++   +I ++ L+
Sbjct: 326 TPSTPCTPNTPSTNRKKIFISALE 349


>SB_27527| Best HMM Match : MFAP1_C (HMM E-Value=0.57)
          Length = 818

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 28/134 (20%), Positives = 60/134 (44%), Gaps = 9/134 (6%)

Query: 324 EPGPGSTSSLATLSVRNNRKTQESKNSVSDMAVITKIDPKPANMLLDNISNPSMPSNIET 383
           +P P  TS++     ++NR+ Q +K + + +    K+  +      +  S PS P N ++
Sbjct: 590 KPFPVKTSNIDKKKQKSNRRAQLAKGAAASLLSSAKLRNQKYERKRNFSSLPSTPKNAKS 649

Query: 384 GSLVVLTVNDPNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSNASMVS 443
            S    T N P    K+      A+ + +   + LP +  +S        +T +++   +
Sbjct: 650 DSRECHTDNIPRK--KRAAAISAAQLQKRARSLSLPCTAASS-------PSTPASSPSPT 700

Query: 444 SPMTSASPNSVASM 457
            P++++ P S  S+
Sbjct: 701 PPLSNSLPPSTLSL 714


>SB_23651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1174

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 415 PVDLPPSLLNSVVGYVRKETTDSNASMVSSPMTSASP 451
           P   PPS +NS     R ++T S +S V+SP TS  P
Sbjct: 590 PTKTPPSTVNSRTPVTRAQSTPSLSSSVTSP-TSRQP 625


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.310    0.125    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,351,305
Number of Sequences: 59808
Number of extensions: 374328
Number of successful extensions: 1041
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1012
Number of HSP's gapped (non-prelim): 37
length of query: 486
length of database: 16,821,457
effective HSP length: 85
effective length of query: 401
effective length of database: 11,737,777
effective search space: 4706848577
effective search space used: 4706848577
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 62 (29.1 bits)