GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001884-TA|BGIBMGA001884-PA|IPR001005|Myb, DNA-binding,
IPR009057|Homeodomain-like
         (486 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        28   0.17 
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    24   2.7  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    24   2.7  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    24   2.7  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   6.3  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   6.3  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 27.9 bits (59), Expect = 0.17
 Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 8/115 (6%)

Query: 351 VSDMAVITKIDPKPANMLLDNISNPSMPSNIETGSLVVLTVNDPNSPTKKMLQTYIAREK 410
           V+D A  +   P P +++ +   +P +P +  T   + LT N  ++P      ++     
Sbjct: 302 VNDDAFNSVATPTPTSVMTELYPSP-VPGH-STSPNLPLTHNIAHNP----YPSHSIYPS 355

Query: 411 GKLLPVDLPPSLLNSVVGYVRKETTDSNASMVSSPMTSASPNSVASMDSRISVTP 465
             L+P++   +L  S + Y  K+T D+N S V++       N+V  +      TP
Sbjct: 356 SNLMPLNNIQNLSQSGINY--KDTNDNNVSAVTTQHQGYPTNTVTILGPNSGNTP 408


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 424 NSVVGYVRKETTDSNASMVSSPMTSASP-NSVASMDSRISVTPLQVNPSPNKRQRKNSYT 482
           N+        T  +N S  +S + S+SP + +   DSR S     ++PSP   ++ NS +
Sbjct: 129 NNTPSATNNNTNFNNNSNGASSVGSSSPFDKLIEEDSR-SNEDTSLHPSPRITKKANSVS 187

Query: 483 I 483
           +
Sbjct: 188 V 188


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 424 NSVVGYVRKETTDSNASMVSSPMTSASP-NSVASMDSRISVTPLQVNPSPNKRQRKNSYT 482
           N+        T  +N S  +S + S+SP + +   DSR S     ++PSP   ++ NS +
Sbjct: 77  NNTPSATNNNTNFNNNSNGASSVGSSSPFDKLIEEDSR-SNEDTSLHPSPRITKKANSVS 135

Query: 483 I 483
           +
Sbjct: 136 V 136


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 424 NSVVGYVRKETTDSNASMVSSPMTSASP-NSVASMDSRISVTPLQVNPSPNKRQRKNSYT 482
           N+        T  +N S  +S + S+SP + +   DSR S     ++PSP   ++ NS +
Sbjct: 260 NNTPSATNNNTNFNNNSNGASSVGSSSPFDKLIEEDSR-SNEDTSLHPSPRITKKANSVS 318

Query: 483 I 483
           +
Sbjct: 319 V 319


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 8/30 (26%), Positives = 15/30 (50%)

Query: 383 TGSLVVLTVNDPNSPTKKMLQTYIAREKGK 412
           TG  V+ T++ P+S    M    +   +G+
Sbjct: 268 TGKTVICTIHQPSSEVYSMFDKLLLMSEGR 297


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 8/30 (26%), Positives = 15/30 (50%)

Query: 383 TGSLVVLTVNDPNSPTKKMLQTYIAREKGK 412
           TG  V+ T++ P+S    M    +   +G+
Sbjct: 268 TGKTVICTIHQPSSEVYSMFDKLLLMSEGR 297


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.310    0.125    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,384
Number of Sequences: 317
Number of extensions: 2538
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 6
length of query: 486
length of database: 114,650
effective HSP length: 59
effective length of query: 427
effective length of database: 95,947
effective search space: 40969369
effective search space used: 40969369
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 45 (22.2 bits)