Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001884-TA|BGIBMGA001884-PA|IPR001005|Myb, DNA-binding,
IPR009057|Homeodomain-like
(486 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 55 3e-08
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 36 0.013
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 33 0.089
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 33 0.089
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 31 0.48
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 30 0.63
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 30 0.63
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 29 1.9
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 28 2.5
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 28 2.5
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 28 2.5
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp... 28 3.4
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 28 3.4
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 28 3.4
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 28 3.4
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 27 4.4
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 4.4
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 27 5.9
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 27 5.9
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 27 7.8
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 27 7.8
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 54.8 bits (126), Expect = 3e-08
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 121 NGEIILDEQSLVIKQSNNGRKVSSE---VREGAWNER--SSGYRRSARTADWTHDETVRF 175
NG+I+LDE SL + + + E V E + + R S+ + + W +T +F
Sbjct: 317 NGQIVLDETSLEVDRHERDFVPAEEREYVEENSLSRRVTSATWGNRQKPEKWNAMDTEKF 376
Query: 176 YRALAAIGTDFTLMEPLFPGRTRRDXXXXXXXXXXXNIAQVDKALR 221
Y+AL+ GTDF L+ +FP R RR N A+V++AL+
Sbjct: 377 YKALSQWGTDFALIANMFPTRNRRQIKLKFKQEERRNPARVNQALK 422
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 35.9 bits (79), Expect = 0.013
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 414 LPVDLPPSLLNSVVGYVRKETTDSNASMVSSPMTSASPNSVASMDSRISVT 464
+PVD+ PS +S TT S++ + S+ +TS+SP++V+S S S++
Sbjct: 104 IPVDIDPSSSSSSAASSTTSTTSSSSLVSSTTLTSSSPSAVSSTTSIPSIS 154
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 33.1 bits (72), Expect = 0.089
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 394 PNSPTKKMLQTYIAREKGKLLPVDLPPSLLNS--VVGYVRKETTDSNASMVSSPMTSA-S 450
P S T + Y +R P PP+ +S ++ +TT SNAS SP+ S+ S
Sbjct: 241 PTSATSSSSRLYPSR------PAPTPPASSSSSPLLSSQTVKTTTSNASRQPSPLVSSKS 294
Query: 451 PNSVASMDSRISVTPLQVNPSPNKRQRKNSYT 482
+++ S + +TP ++ S K R N+ T
Sbjct: 295 TDNIIRSHSPVLLTPQTLSTSETKHIRPNNST 326
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 33.1 bits (72), Expect = 0.089
Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 16/154 (10%)
Query: 329 STSSLATLSVRNNRKTQESKNSVSDMAVITKIDPKPANMLLDNISNPSMPSNIETGSLVV 388
S S A+ S + + N V ++ +P+P + D P ET + V
Sbjct: 362 SQPSAASSSSSSEPSNLDKINDVKKNIEVSANEPQPRPVKEDV---PKSQVGGETDTTDV 418
Query: 389 LTVNDPNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSNASMVSSPMTS 448
+ + P T++ T + E GK + PP+ V T S A+ S+P S
Sbjct: 419 INNSTPKEETEESPSTELP-ETGK----EQPPNKAEPAVPTEASSTKPSEAAEESTPRFS 473
Query: 449 ASPNS--------VASMDSRISVTPLQVNPSPNK 474
PN VA+++SR+ PL + PNK
Sbjct: 474 VRPNKFTGSRAGFVAALESRLQKGPLMRSFVPNK 507
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 30.7 bits (66), Expect = 0.48
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 341 NRKTQESKNSVSDMAVITKIDPKPANM---LLDNISNPSMP-SNIETGSLVVLTVNDPNS 396
N T S +S + A ++ +P+N L NI P +P SN+++ S V PN+
Sbjct: 212 NSSTSTSGSSSNVAAEVSNDASQPSNQDSSLNSNIVKPPLPPSNVQSNSSSSENVPKPNA 271
Query: 397 PTKKMLQTYIARE 409
T++ L T A E
Sbjct: 272 ETQEDLPTIDAHE 284
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 30.3 bits (65), Expect = 0.63
Identities = 30/143 (20%), Positives = 58/143 (40%), Gaps = 3/143 (2%)
Query: 329 STSSLATLSVRNNRKTQESKNSVSDMAVITKIDPKPANMLLDNISNPSMPSNIETGSLVV 388
++SS+ + S+ ++ T S S S + + A ++S+ + ++ + SL
Sbjct: 140 ASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATS--SSLSSTAASNSATSSSLAS 197
Query: 389 LTVNDPNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSNASMVSSPMTS 448
++N S T L S LNS ++ S+ S+P+TS
Sbjct: 198 SSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTS 257
Query: 449 ASPNSVASMDSRISVTPLQVNPS 471
++ + A+ S S + Q N S
Sbjct: 258 SNSTTAATSASATS-SSAQYNTS 279
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 30.3 bits (65), Expect = 0.63
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 409 EKGKLLPVDLPPSLLNSVVGYVRKETTDSNASMVSSPMTSASP---NSVASMDSRISVTP 465
E+ P +LP L+N++ KE ++ + + P +S+S V ++ S++ P
Sbjct: 137 EREHTSPPELPTKLVNTIEKLKVKEENEAPPVIPAKPFSSSSEQHFRKVPALPSKLPPKP 196
Query: 466 LQVNPSPNKRQRKNS 480
L++ + + Q NS
Sbjct: 197 LKITANSSLGQETNS 211
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 28.7 bits (61), Expect = 1.9
Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 14/120 (11%)
Query: 363 KPANMLLDNISNPSMPSNIETGSLVVLTVNDPNSPTKKMLQTYIAREKGKL--LPVDLPP 420
+P + D+ +PS PSN +T S + N+PT I EK + L D PP
Sbjct: 414 RPHSSSTDSPPSPSTPSNTQTDSYF---IQRENTPTNHNSIPTIQLEKSSMDFLRFDPPP 470
Query: 421 SLLNSVVGYVRKETTDSNASMVSSPMTSASPNSVA-SMDSRISVTPLQVNPSPNKRQRKN 479
S + + Y ++ + A N+V+ MD R PSP K + N
Sbjct: 471 SAVKTSHNYGLPFLSNQRCPATPTRNPFAFENTVSIHMDGR--------QPSPIKSRNNN 522
Score = 26.6 bits (56), Expect = 7.8
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 419 PPSLLNSVVGYVRKETTDSNASMVSSPMTSASPNSVASMDSRISVTPLQVNPS----PNK 474
P + S+ G RK+TT S + ++P+ SP S +I P+ PS PN
Sbjct: 53 PNTSFTSLFG-PRKQTTSSPSFSHAAPLHPLSPPSFTHSQPQIQAQPVPRRPSLFDRPNL 111
Query: 475 RQRKNS 480
R +S
Sbjct: 112 VSRSSS 117
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 28.3 bits (60), Expect = 2.5
Identities = 27/134 (20%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Query: 351 VSDMAVITKIDPKPANMLLDNISNPSMPSNIETGSLVVLTVNDPNSPTKKMLQTYIAREK 410
++DM + + K +N + ++ + S P+ T S+ +VN +K + + I +
Sbjct: 194 ITDMPHLAPLQRKNSNASIHSLGSSSRPTLTRTPSITSRSVNSVTERSKSLSKGRIENQF 253
Query: 411 GK--LLPVDLPPSLLN-SVVGYVRKETTDSNASMVSSPMTSASPNSVASMDSRISVTPLQ 467
G+ LL +P +L + S + K T D +S + + +A + + + P
Sbjct: 254 GQLYLLAGRVPNALKHFSTAIALSKATGDFLWQGLSLELFTVCLVIMAHLHVDVQIPPNI 313
Query: 468 VNPSPNKRQRKNSY 481
++ P+ R N++
Sbjct: 314 LSMFPSYNDRLNAF 327
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 28.3 bits (60), Expect = 2.5
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 348 KNSVSDMAVITKIDPKPANMLLDNISNPSMP---SNIETG-SLVVLTVNDPNSPTKKM 401
+NSV D + ID A++ NIS+PS+P S + G SL +++P S T +
Sbjct: 38 ENSVMDTEESSAIDKLSASLQQVNISSPSVPTSQSRVTQGQSLGNTQISNPTSKTNNV 95
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 28.3 bits (60), Expect = 2.5
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 333 LATLSVRNNRKTQESKNSVSDMAVITKIDPKPANMLLDNISNPSMPSNIETGSLVVL 389
L + V N++ ++ S S A++ D P + L +I N PSN SL+ L
Sbjct: 741 LLIILVTKNKRRRKIFTSPSLQAMVVAQDEVPEGISLADIENKENPSNSNVYSLISL 797
>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 27.9 bits (59), Expect = 3.4
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 391 VNDPNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSNASMVSSPMTSAS 450
+ND N P + + +D S ++S+ R + +N ++ S S
Sbjct: 276 INDENFPNPFNVISSYETSASPSTVID-QSSQVSSIFVNKRLRKSVNNQAISRSDSLSLD 334
Query: 451 PNSVASMDSRISVTPLQVNPSPNKRQ 476
+ S+ +R S+ PL+ + SPN R+
Sbjct: 335 TPKIDSLFTRASIKPLKPSQSPNSRR 360
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 27.9 bits (59), Expect = 3.4
Identities = 16/71 (22%), Positives = 28/71 (39%)
Query: 329 STSSLATLSVRNNRKTQESKNSVSDMAVITKIDPKPANMLLDNISNPSMPSNIETGSLVV 388
S S L +S N T +S + + T P P+ ++ P + E+ +
Sbjct: 343 SPSQLDPISNENESDTDDSNTGLRNRTSPTAAPPPPSRRKTGGLNTRPYPQHAESQMSLP 402
Query: 389 LTVNDPNSPTK 399
LT + + P K
Sbjct: 403 LTAKERSKPKK 413
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 27.9 bits (59), Expect = 3.4
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 413 LLPVDLPPSLLNSVVGYVRKETTDSNASMVSSPMTSASPNSVASMDSRISVTPLQVNPSP 472
+LP+D+P S+ ++ + S A V S + P SVA + S P + S
Sbjct: 672 ILPIDVPKSVAEETYSFLPSDVPKSEAEKVYSILPIDVPQSVA--EETYSFKPSDIPES- 728
Query: 473 NKRQRKNSYTITPL 486
+ + Y+I P+
Sbjct: 729 ---EAEKIYSILPI 739
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 27.9 bits (59), Expect = 3.4
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 411 GKLLPVDLPPSLLNSVVGYVRKETT--DSNASMVSSPMTSASPN 452
GK LP LP S+L+SV ++K + S S+V + ++S +PN
Sbjct: 330 GKELPKVLPSSMLSSVAPLMQKSKSVPTSIPSVVPANISSPNPN 373
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 27.5 bits (58), Expect = 4.4
Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 5/107 (4%)
Query: 379 SNIETGSLVVLTVNDPNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSN 438
++I+ GSL V+ N N+P + + + +P D P + + D+N
Sbjct: 235 ASIDNGSLSVVQNNARNNPVDFYIPSSFEESSFQTIPEDFEPQVHDHENQTQLNHHLDNN 294
Query: 439 ASMVSSPMTSASPN-----SVASMDSRISVTPLQVNPSPNKRQRKNS 480
+S+ S + + N +V+S +S S T + +P +NS
Sbjct: 295 SSISSHNPSLETANDGNQETVSSSNSNYSTTRVDNDPHVASYSPQNS 341
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.5 bits (58), Expect = 4.4
Identities = 20/93 (21%), Positives = 36/93 (38%)
Query: 304 EFXXXXXXXXXXXXXXXXXXEPGPGSTSSLATLSVRNNRKTQESKNSVSDMAVITKIDPK 363
EF EPG S S V + R++ S S + V +I P+
Sbjct: 762 EFVSTSSYAPAANTRNAIIREPGILSPLSPRVQPVLSRRESIISMGSSASSYVPLEIAPR 821
Query: 364 PANMLLDNISNPSMPSNIETGSLVVLTVNDPNS 396
P + L +++ P N++ + + + PN+
Sbjct: 822 PMSSLEHTMNSAMSPGNLQRTANLYKPMTTPNA 854
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/63 (22%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 335 TLSVRNNRKTQESKNSVSDMAVITKIDPKPANMLLDNISNPSMPS--NIETGSLVVLTVN 392
++S +N+ + ++S+S + + ++ KP ++ + + PSMPS ++E G+++
Sbjct: 305 SVSTKNSSSNKNLRSSLSKLLSTSNLNNKPLSL---SSTAPSMPSIGSVELGNMIPKETQ 361
Query: 393 DPN 395
P+
Sbjct: 362 PPS 364
>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 549
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 143 SSEVREGAWNERSSGYRRSARTADWTHDETVRF 175
SS+ + W++ S+G+R S+++ D H +T F
Sbjct: 204 SSDSKSVGWDDNSTGFRESSKSLD--HTDTSMF 234
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 431 RKETTDSNASMVSSPMTSASPNSVASMDSRISVTPLQVNPSPNKRQRKNS 480
R T + + P+TS S + ++ + P + SP ++ KNS
Sbjct: 403 RPSVTSPTFEVAARPLTSMDVRSSHNAETEVQAIPAATDISPEVKEGKNS 452
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 120 PNGE-IILDEQSLVIKQSNNGRKVSSEVREGAWNERSSGYRRSARTAD 166
PN E + ++ +L + QS+ +K + W E G+R+S D
Sbjct: 1091 PNTENVYINSYNLWVDQSSQSKKQNRTTNWRRWLESDEGWRKSKANTD 1138
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.310 0.125 0.347
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,574,537
Number of Sequences: 5004
Number of extensions: 54290
Number of successful extensions: 215
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 29
length of query: 486
length of database: 2,362,478
effective HSP length: 75
effective length of query: 411
effective length of database: 1,987,178
effective search space: 816730158
effective search space used: 816730158
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 56 (26.6 bits)
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