Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001884-TA|BGIBMGA001884-PA|IPR001005|Myb, DNA-binding,
IPR009057|Homeodomain-like
(486 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0616 - 35121755-35121913,35121994-35122109,35122198-351223... 40 0.003
11_06_0622 - 25600563-25600817,25601041-25601109,25601251-256014... 32 0.89
02_05_0115 - 25965275-25965517,25965806-25965961,25966103-259661... 32 0.89
09_04_0037 + 13992103-13992624,13993001-13993180,13993423-139936... 31 2.7
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262... 30 3.6
08_02_1547 + 27795664-27795674,27795743-27795892,27796182-277979... 30 4.7
06_03_1204 - 28385702-28385964,28387172-28387412,28387511-283876... 29 6.3
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489... 29 6.3
07_01_0480 + 3616123-3617506,3618033-3618166,3618578-3618818,361... 29 8.3
01_05_0813 + 25453692-25453973 29 8.3
>03_06_0616 -
35121755-35121913,35121994-35122109,35122198-35122342,
35122475-35122646,35123225-35123289
Length = 218
Score = 40.3 bits (90), Expect = 0.003
Identities = 21/83 (25%), Positives = 33/83 (39%)
Query: 141 KVSSEVREGAWNERSSGYRRSARTADWTHDETVRFYRALAAIGTDFTLMEPLFPGRTRRD 200
+ + V E Y A W+ ET +FY L G+DF +++ LFP ++R
Sbjct: 43 RTENHVVENTTKLNYHSYMNRQTRAKWSKSETDKFYEGLQQFGSDFAMIQHLFPDKSRNQ 102
Query: 201 XXXXXXXXXXXNIAQVDKALRSR 223
+ QV A+ R
Sbjct: 103 VRQKFKAEEKKHPMQVHDAIMHR 125
>11_06_0622 -
25600563-25600817,25601041-25601109,25601251-25601437,
25601575-25601688,25603581-25603714,25603818-25604336
Length = 425
Score = 32.3 bits (70), Expect = 0.89
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 325 PGPGSTSSLATLSVRNNRKTQESKNSVSDMAVITKIDPKPANM 367
PGPGS+ + + S +N T E ++S ++ K +P PA M
Sbjct: 12 PGPGSSPAASARSSKNAAVTGELPENLSVRGIVAKPNPPPAAM 54
>02_05_0115 -
25965275-25965517,25965806-25965961,25966103-25966128,
25966177-25966289,25966428-25966541,25968328-25968461,
25968565-25969083
Length = 434
Score = 32.3 bits (70), Expect = 0.89
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 325 PGPGSTSSLATLSVRNNRKTQESKNSVSDMAVITKIDPKPANM 367
PGPGS+ + + S +N T E ++S ++ K +P PA M
Sbjct: 12 PGPGSSPAASARSSKNAAVTGELPENLSVCGIVAKPNPPPAAM 54
>09_04_0037 +
13992103-13992624,13993001-13993180,13993423-13993691,
13994120-13995773
Length = 874
Score = 30.7 bits (66), Expect = 2.7
Identities = 13/56 (23%), Positives = 30/56 (53%)
Query: 384 GSLVVLTVNDPNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSNA 439
GS+V++T++ P+ + +L + +G+L+ + P +L + G+ R N+
Sbjct: 298 GSIVLMTIHQPSFRIQMLLDRLVILARGRLIYLGSPSTLQTHLAGFGRPVPDGENS 353
>07_03_1626 +
28223967-28225294,28225506-28225779,28225939-28226230,
28226492-28226651,28226809-28226917,28227004-28227099
Length = 752
Score = 30.3 bits (65), Expect = 3.6
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 151 WNERSSGYRRSARTADWTHDETV-RFYRALAAIGTDFTLME 190
WN +G R + +W + E++ RF AL A G + TL++
Sbjct: 668 WNVVGAGIERFVQMTNWQYSESLKRFQHALEACGVNKTLIK 708
>08_02_1547 + 27795664-27795674,27795743-27795892,27796182-27797906,
27799447-27799546,27799657-27800268,27800399-27800521,
27800905-27801039,27801108-27801209,27801716-27801778,
27801854-27802045,27802121-27802258,27802632-27802694,
27803068-27803466
Length = 1270
Score = 29.9 bits (64), Expect = 4.7
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 337 SVRNNRKTQESKNSVSDMAVITKIDPKPANMLLDNISNPSMPSNI 381
S+R +R T E+ ++D T K A+ L+++ N S+P+ I
Sbjct: 1100 SIRMDRNTYEANKDLNDTDTCTTFRAKLASTLINSSMNESVPTTI 1144
>06_03_1204 -
28385702-28385964,28387172-28387412,28387511-28387664,
28387750-28387981,28388157-28388192,28388365-28388566,
28388661-28388848,28389420-28389505,28389526-28389597,
28389826-28389881,28390266-28390697
Length = 653
Score = 29.5 bits (63), Expect = 6.3
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 361 DPKPANMLLDNISNPSMPSNIETGSLVVLTVNDPNSPTKKMLQT--YIARE 409
D KP+N+LLD+ NP + + GS V L + TK+++ T YIA E
Sbjct: 394 DLKPSNILLDHDMNPKIG---DFGSAVTLVSDVAEERTKRVVGTSGYIAPE 441
>01_01_0645 +
4890647-4890682,4891684-4891929,4892021-4892317,
4892407-4892574,4892674-4892841,4892924-4893004,
4893105-4893171,4893657-4893751,4894027-4894099,
4894177-4894247,4894325-4894374,4895263-4895375,
4895461-4895513
Length = 505
Score = 29.5 bits (63), Expect = 6.3
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 385 SLVVLTVNDPNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSNASMVSS 444
S +++ + S T+ M + +A G+ PV+ LL +V G K+ T ++SS
Sbjct: 425 SAILMNLESKASATEDMGRQILAF--GERKPVE---HLLKAVDGVTLKDITALAEKIISS 479
Query: 445 PMTSASPNSVASMDSRISVT 464
P+T AS +V ++ + SV+
Sbjct: 480 PLTMASHGNVLNVPTYDSVS 499
>07_01_0480 +
3616123-3617506,3618033-3618166,3618578-3618818,
3618912-3619120,3619234-3619265,3619363-3619474,
3619609-3619890
Length = 797
Score = 29.1 bits (62), Expect = 8.3
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 328 GSTSSLATLSVRNNRKTQESKNSVSDMAVITKIDPKPANMLLDNISNPSMPSNIETGSLV 387
G LA LS+RNN SVSDMA + + +N L N+ + S N++ L
Sbjct: 179 GRLPVLAVLSLRNNSLEGTLPGSVSDMASLRSLS-LASNNLSGNLPDMSGAKNLQVIDLA 237
Query: 388 VLTVNDPNSPT--KKMLQTYIAREKGKLLPVDLPPSL 422
++ P P +K+ +A G LPP L
Sbjct: 238 NNSLG-PEFPRLGRKVASVVLA---GNRFSDGLPPEL 270
>01_05_0813 + 25453692-25453973
Length = 93
Score = 29.1 bits (62), Expect = 8.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 152 NERSSGYRRSARTADWTHDETVRFYRALAAIGTD 185
++ SS SA +++WT + +F RALA TD
Sbjct: 5 SKASSSSSASAASSEWTKQQNKQFERALAVYDTD 38
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.310 0.125 0.347
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,673,310
Number of Sequences: 37544
Number of extensions: 317277
Number of successful extensions: 886
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 880
Number of HSP's gapped (non-prelim): 10
length of query: 486
length of database: 14,793,348
effective HSP length: 85
effective length of query: 401
effective length of database: 11,602,108
effective search space: 4652445308
effective search space used: 4652445308
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 62 (29.1 bits)
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