BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001884-TA|BGIBMGA001884-PA|IPR001005|Myb, DNA-binding, IPR009057|Homeodomain-like (486 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053) 49 7e-06 SB_53796| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.39 SB_56860| Best HMM Match : Cadherin (HMM E-Value=4.4e-16) 31 1.6 SB_32684| Best HMM Match : Extensin_2 (HMM E-Value=0.96) 31 1.6 SB_37123| Best HMM Match : Extensin_2 (HMM E-Value=1.5) 31 2.1 SB_29939| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.1 SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 31 2.7 SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.6 SB_57119| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.4e-20) 30 4.8 SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.8 SB_27527| Best HMM Match : MFAP1_C (HMM E-Value=0.57) 30 4.8 SB_23651| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3 >SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053) Length = 1152 Score = 49.2 bits (112), Expect = 7e-06 Identities = 22/50 (44%), Positives = 33/50 (66%) Query: 172 TVRFYRALAAIGTDFTLMEPLFPGRTRRDXXXXXXXXXXXNIAQVDKALR 221 T++FY+AL+ +GTDF+LM PLFP RTR++ + +DKAL+ Sbjct: 2 TLKFYKALSQVGTDFSLMMPLFPKRTRKELKAKFKREEKLHRDIIDKALQ 51 >SB_53796| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 487 Score = 33.5 bits (73), Expect = 0.39 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 326 GPGSTSSLATLSVRNNRKTQESKNSVSDMAVITKIDPKPANMLLDNISNPSMP 378 GP TSS ATL+ N + +S S TKI P P+ L + S PS+P Sbjct: 80 GPRPTSSSATLTSANTMVHEPEASSRSPKTFTTKI-PTPSKSLATSSSVPSLP 131 >SB_56860| Best HMM Match : Cadherin (HMM E-Value=4.4e-16) Length = 748 Score = 31.5 bits (68), Expect = 1.6 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 5/47 (10%) Query: 353 DMAVITK-IDPKPANMLLDNISNPSMPSNIETGSLV-VLTVNDPNSP 397 D +I K ++ P ++ L +N S+P N TG+LV LT DP SP Sbjct: 642 DFVIIVKDVNEAPTSITL---TNKSIPENSPTGTLVGTLTCEDPESP 685 >SB_32684| Best HMM Match : Extensin_2 (HMM E-Value=0.96) Length = 201 Score = 31.5 bits (68), Expect = 1.6 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 6/105 (5%) Query: 372 ISNPSMPSNIETGSLVVLTVNDPNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVR 431 +++P + N T +V T NSP + T + + LPP ++NS V Sbjct: 65 VNSPPLMVN-STPLMVNSTPPMVNSPPLMVNSTPLRVNSTPQMVDSLPP-IVNSPPPMVN 122 Query: 432 KETTDSNAS--MVSS--PMTSASPNSVASMDSRISVTPLQVNPSP 472 N++ MV+S PM ++ P V S R++ TPL VN +P Sbjct: 123 SPPLMVNSTPLMVNSTPPMVNSPPLMVNSTPLRVNSTPLMVNSTP 167 Score = 31.5 bits (68), Expect = 1.6 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%) Query: 416 VDLPPSLLNSVVGYVRKET--TDSNASMVSSP--MTSASPNSVASMDSRISVTPLQVNPS 471 V+ PP ++NS V +S MV+SP M +++P V S ++ TPL+VN + Sbjct: 114 VNSPPPMVNSPPLMVNSTPLMVNSTPPMVNSPPLMVNSTPLRVNSTPLMVNSTPLRVNST 173 Query: 472 P 472 P Sbjct: 174 P 174 >SB_37123| Best HMM Match : Extensin_2 (HMM E-Value=1.5) Length = 318 Score = 31.1 bits (67), Expect = 2.1 Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 4/110 (3%) Query: 344 TQESKNSVSDMAVITKIDPKPANMLLDNISNPSMPSNIETGSLVVLTVNDPNSPTKKMLQ 403 TQ NS S + I P N DN+S P + + S + T ++P+SP + Q Sbjct: 181 TQTQDNSSSPLTQTQDISSSPLNQTWDNLSCPLTQTWDNSSSPLTQTWDNPSSP---LTQ 237 Query: 404 TYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSNASMVSSPMTSASPNS 453 T+ D+ S LN T + SSP+T NS Sbjct: 238 TWDNSSSSLTRTRDISSSPLNQTWDNSISPLTQT-WDNPSSPLTQTWDNS 286 >SB_29939| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1122 Score = 31.1 bits (67), Expect = 2.1 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 8/88 (9%) Query: 325 PGPGSTSSLATLSVRNNRKTQESKNSVSDMAVITKIDPK-PANMLLDNI-----SNPSMP 378 P S S L+ N R S +S+S V T +P+ P++ L +NP P Sbjct: 800 PSSSSLSRFIVLTSANPR--YPSSSSLSRFIVYTSANPRYPSSFSLSRFIVHTSANPRHP 857 Query: 379 SNIETGSLVVLTVNDPNSPTKKMLQTYI 406 S+ L+V T P P+ L +I Sbjct: 858 SSSSLSRLIVYTSAKPRYPSSSSLSRFI 885 >SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) Length = 1952 Score = 30.7 bits (66), Expect = 2.7 Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 6/151 (3%) Query: 325 PGPGSTSSLATLSVRNNRKTQESKNSVSDMAVITKIDPKPANMLLDNISNPSMPSNIETG 384 P P T+S +++ N T S + T I P P ++ N T Sbjct: 268 PSPNETTSSMYVTIAVNSTTSSYSFETSAVNATTTISPSPNG--TTTAVYETLTLNATTS 325 Query: 385 SLVVLTVNDPNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVRK--ETTDSNASMV 442 S TV +PT + + + V+ S+ S G ET N++ Sbjct: 326 SSTYATVAVNATPTISLSLNGTTSSVYETIAVNSTSSISPSPNGTTSSVYETITVNSTSS 385 Query: 443 SSPMTSASPNSVASMDSRISVTPLQVNPSPN 473 SP + + +SV + ++ TP ++PSPN Sbjct: 386 ISPSPNGTTSSVYETIA-VNSTP-SISPSPN 414 >SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 286 Score = 30.3 bits (65), Expect = 3.6 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 434 TTDSNASMVSSPMTSASPNSVASMDSRISVTPLQVNPSPN-KRQRKNSYTITP 485 TT NA+ + T+ +PN+ + + + TP +PN N+ T TP Sbjct: 150 TTSPNATTTTPNTTTTTPNTTTTTPTATTTTPTATTTTPNTTTNTPNATTTTP 202 >SB_57119| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.4e-20) Length = 1423 Score = 29.9 bits (64), Expect = 4.8 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 4/97 (4%) Query: 327 PGSTSSLATLSVRNNRKTQE--SKNSVSDMAVITKIDPKPANMLLDNISNPSMPSNIETG 384 P S +++V NNR ++ SK S ++ IT I PK + + P + + + Sbjct: 681 PNSKQVPISITVNNNRDAKKIWSKESNLSLSDITDIQPKTPVFVKEEF--PDLSNTKQGE 738 Query: 385 SLVVLTVNDPNSPTKKMLQTYIAREKGKLLPVDLPPS 421 + LT + + T+ + +Y A K K P LP S Sbjct: 739 NQSTLTSDWLSGGTRMPILSYSAALKTKPQPRQLPDS 775 >SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1011 Score = 29.9 bits (64), Expect = 4.8 Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 7/144 (4%) Query: 327 PGSTSSLATLSVRNNRKTQESKNSVSDMAV-ITKIDPK-PANMLLDNI-SNPSMPSNIET 383 P + S +T S+ N T + ++ S ++ IT P P+ ++ S PS PS T Sbjct: 210 PSTLSMPSTPSMPNTPSTPSTPSTPSTLSTPITPSTPSTPSTPSTPSMPSTPSTPSTPST 269 Query: 384 GSLVVLTVNDPNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSNASMVS 443 S T N P++P+ + + + P PS S +T S S Sbjct: 270 PS-TPCTPNTPSTPSTPSMPSTPSTPSTPSTPST--PST-PSAPSTPSTPSTPSTPSTPK 325 Query: 444 SPMTSASPNSVASMDSRISVTPLQ 467 +P T +PN+ ++ +I ++ L+ Sbjct: 326 TPSTPCTPNTPSTNRKKIFISALE 349 >SB_27527| Best HMM Match : MFAP1_C (HMM E-Value=0.57) Length = 818 Score = 29.9 bits (64), Expect = 4.8 Identities = 28/134 (20%), Positives = 60/134 (44%), Gaps = 9/134 (6%) Query: 324 EPGPGSTSSLATLSVRNNRKTQESKNSVSDMAVITKIDPKPANMLLDNISNPSMPSNIET 383 +P P TS++ ++NR+ Q +K + + + K+ + + S PS P N ++ Sbjct: 590 KPFPVKTSNIDKKKQKSNRRAQLAKGAAASLLSSAKLRNQKYERKRNFSSLPSTPKNAKS 649 Query: 384 GSLVVLTVNDPNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSNASMVS 443 S T N P K+ A+ + + + LP + +S +T +++ + Sbjct: 650 DSRECHTDNIPRK--KRAAAISAAQLQKRARSLSLPCTAASS-------PSTPASSPSPT 700 Query: 444 SPMTSASPNSVASM 457 P++++ P S S+ Sbjct: 701 PPLSNSLPPSTLSL 714 >SB_23651| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1174 Score = 29.5 bits (63), Expect = 6.3 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Query: 415 PVDLPPSLLNSVVGYVRKETTDSNASMVSSPMTSASP 451 P PPS +NS R ++T S +S V+SP TS P Sbjct: 590 PTKTPPSTVNSRTPVTRAQSTPSLSSSVTSP-TSRQP 625 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.310 0.125 0.347 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,351,305 Number of Sequences: 59808 Number of extensions: 374328 Number of successful extensions: 1041 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 1012 Number of HSP's gapped (non-prelim): 37 length of query: 486 length of database: 16,821,457 effective HSP length: 85 effective length of query: 401 effective length of database: 11,737,777 effective search space: 4706848577 effective search space used: 4706848577 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 42 (21.8 bits) S2: 62 (29.1 bits)
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