GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001884-TA|BGIBMGA001884-PA|IPR001005|Myb, DNA-binding,
IPR009057|Homeodomain-like
         (486 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          25   3.4  
AY973196-1|AAY41590.1|   94|Anopheles gambiae defensin 4 protein.      25   6.0  
AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein hom...    25   6.0  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    24   7.9  
CR954256-4|CAJ14145.1| 1494|Anopheles gambiae tensin protein.          24   7.9  

>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 434 TTDSNASMVSSPMTSASPNSVASMDSRISVTPLQVNPSPNKRQRKNSYTITPL 486
           T  S  S  SS  + +SP+SVAS +SR S     ++P  +   +  +YT+  L
Sbjct: 60  TYASALSPSSSSASPSSPSSVASPNSRAS----NMSPESSASDQSAAYTLQNL 108


>AY973196-1|AAY41590.1|   94|Anopheles gambiae defensin 4 protein.
          Length = 94

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 441 MVSSPMTSASPNSVASMDSRISVTPLQVNPSPNKRQRKNSYTIT 484
           +VS+ MT A+P S  S   R  + P Q+  +P   Q +++   T
Sbjct: 19  LVSTEMTFANPLSPNSPAERPHIQPFQMASAPLVAQSRSAMVQT 62


>AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein
           homolog protein.
          Length = 394

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 443 SSPMTSASPNSVASMDSRISVTPLQVNPSPNKRQRKNSYTI 483
           SSP  +  P  V S    +     Q  P+P K + K+ Y +
Sbjct: 180 SSPQITPRPTPVKSPYEWMKKQSYQSQPNPGKTRTKDKYRV 220


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskeletal
            structural protein protein.
          Length = 1645

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 438  NASMVSSPMTSASPNSVASMDSRISVTPLQ 467
            N S   S   SA  NSVA+  S  SVT ++
Sbjct: 1260 NVSQAGSRKNSADSNSVATHSSYYSVTGVE 1289


>CR954256-4|CAJ14145.1| 1494|Anopheles gambiae tensin protein.
          Length = 1494

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 12/135 (8%)

Query: 324 EPGPGSTSSLATLSVRNNRKTQESKNSVSDMAVITKIDPKPANMLLDNISNPSMPSNIET 383
           EP   +   L T++   +  TQ   +  S  A I K  PK        IS P+  SN  +
Sbjct: 393 EPIAENGDLLETINEDESGHTQGPLDG-SLYATILK-SPKSPTATTHLISPPAEFSNGSS 450

Query: 384 GSLVVLTVNDPNSPTKKMLQT----YIARE---KGKLLPVDL-PPSLLNSVVG--YVRKE 433
            SL++L  N P  P  +  +T    Y+++    +   +P  L PP   +   G   VR  
Sbjct: 451 KSLLLLNGNGPPPPVPERSKTPNSIYLSQNGTPRSTPVPFALAPPPAASPAFGDRSVRAV 510

Query: 434 TTDSNASMVSSPMTS 448
           ++ SN+  V+S  +S
Sbjct: 511 SSASNSVSVNSSYSS 525


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.310    0.125    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 334,466
Number of Sequences: 2123
Number of extensions: 10322
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 6
length of query: 486
length of database: 516,269
effective HSP length: 67
effective length of query: 419
effective length of database: 374,028
effective search space: 156717732
effective search space used: 156717732
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 50 (24.2 bits)