GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001884-TA|BGIBMGA001884-PA|IPR001005|Myb, DNA-binding,
IPR009057|Homeodomain-like
         (486 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK057871-1|BAB71602.1|  635|Homo sapiens protein ( Homo sapiens ...    63   2e-09
AJ279120-1|CAC21448.1| 2187|Homo sapiens TFNR protein.                 63   2e-09
AJ238520-1|CAC04245.1| 2254|Homo sapiens putative transcription ...    63   2e-09
AF298152-1|AAG30221.1| 1372|Homo sapiens RNA polymerase III tran...    63   2e-09
AF298151-1|AAG30220.1| 1388|Homo sapiens RNA polymerase III tran...    63   2e-09
AF176695-1|AAG09268.1|  846|Homo sapiens transcription factor II...    63   2e-09
AB051476-1|BAB21780.3| 2627|Homo sapiens KIAA1689 protein protein.     63   2e-09
AK092426-1|BAC03887.1|  258|Homo sapiens protein ( Homo sapiens ...    34   0.97 
BC117319-1|AAI17320.1|  257|Homo sapiens TPRXL protein protein.        32   3.9  
X75917-1|CAA53517.1|  398|Homo sapiens fetal beta-MHC binding fa...    31   9.1  

>AK057871-1|BAB71602.1|  635|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25142 fis, clone CBR07252, highly similar to
           Homo sapiens mRNA for putative transcription factor-like
           nuclear ).
          Length = 635

 Score = 62.9 bits (146), Expect = 2e-09
 Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 109 GAAPVPQIKLGPNGEIILDEQSLVIKQ-SNNGRKVSSE---VREGAWNERSSGYRRSART 164
           G   VP++K+  +G IILDE+SL ++     G  V  E   + E       S +R++  +
Sbjct: 221 GPLLVPRVKVAEDGSIILDEESLTVEVLRTKGPCVVEENDPIFERGSTTTYSSFRKNYYS 280

Query: 165 ADWTHDETVRFYRALAAIGTDFTLMEPLFPGRTRRDXXXXXXXXXXXNIAQVDKALRSRV 224
             W++ ET  F+ A++ +GTDF+++  LFP R R +           N  ++DKA + + 
Sbjct: 281 KPWSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKREEKTNGWRIDKAFQEKR 340

Query: 225 EWD 227
            +D
Sbjct: 341 PFD 343


>AJ279120-1|CAC21448.1| 2187|Homo sapiens TFNR protein.
          Length = 2187

 Score = 62.9 bits (146), Expect = 2e-09
 Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 109 GAAPVPQIKLGPNGEIILDEQSLVIKQ-SNNGRKVSSE---VREGAWNERSSGYRRSART 164
           G   VP++K+  +G IILDE+SL ++     G  V  E   + E       S +R++  +
Sbjct: 241 GPLLVPRVKVAEDGSIILDEESLTVEVLRTKGPCVVEENDPIFERGSTTTYSSFRKNYYS 300

Query: 165 ADWTHDETVRFYRALAAIGTDFTLMEPLFPGRTRRDXXXXXXXXXXXNIAQVDKALRSRV 224
             W++ ET  F+ A++ +GTDF+++  LFP R R +           N  ++DKA + + 
Sbjct: 301 KPWSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKREEKTNGWRIDKAFQEKR 360

Query: 225 EWD 227
            +D
Sbjct: 361 PFD 363


>AJ238520-1|CAC04245.1| 2254|Homo sapiens putative transcription
           factor-like nuclear regulator protein.
          Length = 2254

 Score = 62.9 bits (146), Expect = 2e-09
 Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 109 GAAPVPQIKLGPNGEIILDEQSLVIKQ-SNNGRKVSSE---VREGAWNERSSGYRRSART 164
           G   VP++K+  +G IILDE+SL ++     G  V  E   + E       S +R++  +
Sbjct: 241 GPLLVPRVKVAEDGSIILDEESLTVEVLRTKGPCVVEENDPIFERGSTTTYSSFRKNYYS 300

Query: 165 ADWTHDETVRFYRALAAIGTDFTLMEPLFPGRTRRDXXXXXXXXXXXNIAQVDKALRSRV 224
             W++ ET  F+ A++ +GTDF+++  LFP R R +           N  ++DKA + + 
Sbjct: 301 KPWSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKREEKTNGWRIDKAFQEKR 360

Query: 225 EWD 227
            +D
Sbjct: 361 PFD 363


>AF298152-1|AAG30221.1| 1372|Homo sapiens RNA polymerase III
           transcription initiation factor B'' short protein.
          Length = 1372

 Score = 62.9 bits (146), Expect = 2e-09
 Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 109 GAAPVPQIKLGPNGEIILDEQSLVIKQ-SNNGRKVSSE---VREGAWNERSSGYRRSART 164
           G   VP++K+  +G IILDE+SL ++     G  V  E   + E       S +R++  +
Sbjct: 241 GPLLVPRVKVAEDGSIILDEESLTVEVLRTKGPCVVEENDPIFERGSTTTYSSFRKNYYS 300

Query: 165 ADWTHDETVRFYRALAAIGTDFTLMEPLFPGRTRRDXXXXXXXXXXXNIAQVDKALRSRV 224
             W++ ET  F+ A++ +GTDF+++  LFP R R +           N  ++DKA + + 
Sbjct: 301 KPWSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKREEKTNGWRIDKAFQEKR 360

Query: 225 EWD 227
            +D
Sbjct: 361 PFD 363


>AF298151-1|AAG30220.1| 1388|Homo sapiens RNA polymerase III
           transcription initiation factor B'' protein.
          Length = 1388

 Score = 62.9 bits (146), Expect = 2e-09
 Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 109 GAAPVPQIKLGPNGEIILDEQSLVIKQ-SNNGRKVSSE---VREGAWNERSSGYRRSART 164
           G   VP++K+  +G IILDE+SL ++     G  V  E   + E       S +R++  +
Sbjct: 241 GPLLVPRVKVAEDGSIILDEESLTVEVLRTKGPCVVEENDPIFERGSTTTYSSFRKNYYS 300

Query: 165 ADWTHDETVRFYRALAAIGTDFTLMEPLFPGRTRRDXXXXXXXXXXXNIAQVDKALRSRV 224
             W++ ET  F+ A++ +GTDF+++  LFP R R +           N  ++DKA + + 
Sbjct: 301 KPWSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKREEKTNGWRIDKAFQEKR 360

Query: 225 EWD 227
            +D
Sbjct: 361 PFD 363


>AF176695-1|AAG09268.1|  846|Homo sapiens transcription factor IIIB
           150 protein.
          Length = 846

 Score = 62.9 bits (146), Expect = 2e-09
 Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 109 GAAPVPQIKLGPNGEIILDEQSLVIKQ-SNNGRKVSSE---VREGAWNERSSGYRRSART 164
           G   VP++K+  +G IILDE+SL ++     G  V  E   + E       S +R++  +
Sbjct: 241 GPLLVPRVKVAEDGSIILDEESLTVEVLRTKGPCVVEENDPIFERGSTTTYSSFRKNYYS 300

Query: 165 ADWTHDETVRFYRALAAIGTDFTLMEPLFPGRTRRDXXXXXXXXXXXNIAQVDKALRSRV 224
             W++ ET  F+ A++ +GTDF+++  LFP R R +           N  ++DKA + + 
Sbjct: 301 KPWSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKREEKTNGWRIDKAFQEKR 360

Query: 225 EWD 227
            +D
Sbjct: 361 PFD 363


>AB051476-1|BAB21780.3| 2627|Homo sapiens KIAA1689 protein protein.
          Length = 2627

 Score = 62.9 bits (146), Expect = 2e-09
 Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 109 GAAPVPQIKLGPNGEIILDEQSLVIKQ-SNNGRKVSSE---VREGAWNERSSGYRRSART 164
           G   VP++K+  +G IILDE+SL ++     G  V  E   + E       S +R++  +
Sbjct: 244 GPLLVPRVKVAEDGSIILDEESLTVEVLRTKGPCVVEENDPIFERGSTTTYSSFRKNYYS 303

Query: 165 ADWTHDETVRFYRALAAIGTDFTLMEPLFPGRTRRDXXXXXXXXXXXNIAQVDKALRSRV 224
             W++ ET  F+ A++ +GTDF+++  LFP R R +           N  ++DKA + + 
Sbjct: 304 KPWSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKREEKTNGWRIDKAFQEKR 363

Query: 225 EWD 227
            +D
Sbjct: 364 PFD 366


>AK092426-1|BAC03887.1|  258|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35107 fis, clone PLACE6006871, moderately
           similar to SUPPRESSOR PROTEIN SRP40. ).
          Length = 258

 Score = 34.3 bits (75), Expect = 0.97
 Identities = 41/202 (20%), Positives = 75/202 (37%), Gaps = 10/202 (4%)

Query: 273 SMSKKLLESSVLRCDLSNVDHTADDIIARASEFXXXXXXXXXXXXXXXXXXEPGPGSTSS 332
           S S+ +L SS+L   + +   ++    +  S                     P   S+SS
Sbjct: 40  SSSRSILSSSILSSSIPSSSSSSSSPSSSHSSSSPSSSHSSSSPSSSSSTSSPSSSSSSS 99

Query: 333 LATLSVRNNRKTQESKNSVSDMAVITKIDPKPANMLLDNISNPSMPSNIETGSLVVLTVN 392
            ++    +N  +  S +S S  +  +   P  ++      S+PS  S+  + S    + +
Sbjct: 100 SSSSPSSSNSSSSSSSSSPSSSSSSSSSSPSSSS------SSPSSSSSSSSSS-PSSSSS 152

Query: 393 DPNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSNAS---MVSSPMTSA 449
            P+S +     +  +            PS  NS         + S++S     SSP +S+
Sbjct: 153 SPSSSSSSSSSSSSSPSSSSPSSSGSSPSSSNSSPSSSSSSPSSSSSSPSPRSSSPSSSS 212

Query: 450 SPNSVASMDSRISVTPLQVNPS 471
           S  S  S  S  S +P   +PS
Sbjct: 213 SSTSSPSTSSPSSSSPSSSSPS 234


>BC117319-1|AAI17320.1|  257|Homo sapiens TPRXL protein protein.
          Length = 257

 Score = 32.3 bits (70), Expect = 3.9
 Identities = 42/202 (20%), Positives = 76/202 (37%), Gaps = 11/202 (5%)

Query: 273 SMSKKLLESSVLRCDLSNVDHTADDIIARASEFXXXXXXXXXXXXXXXXXXEPGPGSTSS 332
           S S+ +L SS+L   + +   ++    +  S                     P   S+SS
Sbjct: 40  SSSRSILSSSILSSSIPSSSSSSSSPSSSHSSSSPSSSHSSSSPSSSSSTSSPSSSSSSS 99

Query: 333 LATLSVRNNRKTQESKNSVSDMAVITKIDPKPANMLLDNISNPSMPSNIETGSLVVLTVN 392
            ++ S  +N  +  S +S S  +  +   P  ++      S+PS  S+  + S    + +
Sbjct: 100 SSSPS-SSNSSSSSSSSSPSSSSSSSSSSPSSSS------SSPSSSSSSSSSS-PSSSSS 151

Query: 393 DPNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSNAS---MVSSPMTSA 449
            P+S +     +  +            PS  NS         + S++S     SSP +S+
Sbjct: 152 SPSSSSSSSSSSSSSPSSSSPSSSGSSPSSSNSSPSSSSSSPSSSSSSPSPRSSSPSSSS 211

Query: 450 SPNSVASMDSRISVTPLQVNPS 471
           S  S  S  S  S +P   +PS
Sbjct: 212 SSTSSPSTSSPSSSSPSSSSPS 233


>X75917-1|CAA53517.1|  398|Homo sapiens fetal beta-MHC binding
           factor protein.
          Length = 398

 Score = 31.1 bits (67), Expect = 9.1
 Identities = 28/142 (19%), Positives = 59/142 (41%), Gaps = 8/142 (5%)

Query: 337 SVRNNRKTQESKNSVSDMAVITKIDPKPANMLLDNISNPSMPSNIETGSLVVLTVNDPNS 396
           +V+ N KT+ S+ +V     +   + K  N   ++ S P   +  +        + D +S
Sbjct: 20  TVKKNEKTKPSEGTVKGKKGVK--EAKVNNPCKEDASRPKQHNKKKR------IIYDSDS 71

Query: 397 PTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSNASMVSSPMTSASPNSVAS 456
            +++ +Q   A++K + LPV   P  ++          TD +   +     S S  +  S
Sbjct: 72  ESEETVQVKNAKKKSEKLPVSCKPGKISRKDPVTYISETDEDDDFLCKKAASKSKENGVS 131

Query: 457 MDSRISVTPLQVNPSPNKRQRK 478
            +S +  + ++ N    K + K
Sbjct: 132 TNSYLGASNVKKNEENTKTKSK 153


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.310    0.125    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,470,377
Number of Sequences: 224733
Number of extensions: 1620305
Number of successful extensions: 3619
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3584
Number of HSP's gapped (non-prelim): 43
length of query: 486
length of database: 73,234,838
effective HSP length: 93
effective length of query: 393
effective length of database: 52,334,669
effective search space: 20567524917
effective search space used: 20567524917
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 67 (31.1 bits)