Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001884-TA|BGIBMGA001884-PA|IPR001005|Myb, DNA-binding,
IPR009057|Homeodomain-like
(486 letters)
Database: fruitfly
52,641 sequences; 24,830,863 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT011169-1|AAR84384.1| 727|Drosophila melanogaster GH09630p pro... 86 9e-17
AE014134-2337|AAF53291.2| 695|Drosophila melanogaster CG9305-PA... 86 9e-17
BT029083-1|ABJ17016.1| 332|Drosophila melanogaster IP10839p pro... 33 1.2
AE014134-2642|AAN10915.1| 332|Drosophila melanogaster CG18518-P... 33 1.2
AY122259-1|AAM52771.1| 2176|Drosophila melanogaster SD09011p pro... 31 2.7
AY069572-1|AAL39717.1| 510|Drosophila melanogaster LD31122p pro... 31 3.6
AY060416-1|AAL25455.1| 358|Drosophila melanogaster LD37618p pro... 31 3.6
AJ010073-1|CAB45234.1| 614|Drosophila melanogaster XRCC1 protei... 31 3.6
AF132142-1|AAD33589.1| 614|Drosophila melanogaster DNA repair p... 31 3.6
AE014298-727|AAF46025.1| 614|Drosophila melanogaster CG4208-PA ... 31 3.6
AE014296-2923|AAF49329.1| 680|Drosophila melanogaster CG6311-PB... 31 3.6
BT025128-1|ABE73299.1| 416|Drosophila melanogaster IP08460p pro... 31 4.7
BT023562-1|AAY84962.1| 208|Drosophila melanogaster IP09703p pro... 31 4.7
BT023547-1|AAY84947.1| 209|Drosophila melanogaster IP09803p pro... 31 4.7
AY051964-1|AAK93388.1| 1266|Drosophila melanogaster LD43047p pro... 30 6.2
AL009192-2|CAA15686.1| 2342|Drosophila melanogaster EG:133E12.4 ... 30 6.2
AF242291-1|AAF63753.1| 2362|Drosophila melanogaster nuclear prot... 30 6.2
AE014298-308|AAF45704.2| 2301|Drosophila melanogaster CG4399-PB ... 30 6.2
AE014297-1339|AAG22146.2| 1266|Drosophila melanogaster CG14712-P... 30 6.2
BT023686-1|AAY85086.1| 185|Drosophila melanogaster IP04203p pro... 30 8.2
>BT011169-1|AAR84384.1| 727|Drosophila melanogaster GH09630p
protein.
Length = 727
Score = 86.2 bits (204), Expect = 9e-17
Identities = 52/118 (44%), Positives = 68/118 (57%), Gaps = 5/118 (4%)
Query: 108 TGAAPVPQIKLGPNGEIILDEQSLVIKQSNN--GRKV---SSEVREGAWNERSSGYRRSA 162
T A VPQ+KL NGE+I+DE++L I+ + RKV SS + + Y+R
Sbjct: 287 TSAMLVPQLKLDANGEMIIDEKTLEIETTAEVEARKVLANSSLILMDETTGDNGFYKRHK 346
Query: 163 RTADWTHDETVRFYRALAAIGTDFTLMEPLFPGRTRRDXXXXXXXXXXXNIAQVDKAL 220
RT WT DETVRFYR+L IGTDF+LM +FP R+RRD N ++KAL
Sbjct: 347 RTPYWTSDETVRFYRSLQIIGTDFSLMCQMFPTRSRRDLKLKYKKEERTNGQLINKAL 404
>AE014134-2337|AAF53291.2| 695|Drosophila melanogaster CG9305-PA
protein.
Length = 695
Score = 86.2 bits (204), Expect = 9e-17
Identities = 52/118 (44%), Positives = 68/118 (57%), Gaps = 5/118 (4%)
Query: 108 TGAAPVPQIKLGPNGEIILDEQSLVIKQSNN--GRKV---SSEVREGAWNERSSGYRRSA 162
T A VPQ+KL NGE+I+DE++L I+ + RKV SS + + Y+R
Sbjct: 287 TSAMLVPQLKLDANGEMIIDEKTLEIETTAEVEARKVLANSSLILMDETTGDNGFYKRHK 346
Query: 163 RTADWTHDETVRFYRALAAIGTDFTLMEPLFPGRTRRDXXXXXXXXXXXNIAQVDKAL 220
RT WT DETVRFYR+L IGTDF+LM +FP R+RRD N ++KAL
Sbjct: 347 RTPYWTSDETVRFYRSLQIIGTDFSLMCQMFPTRSRRDLKLKYKKEERTNGQLINKAL 404
>BT029083-1|ABJ17016.1| 332|Drosophila melanogaster IP10839p
protein.
Length = 332
Score = 32.7 bits (71), Expect = 1.2
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 371 NISNPSMPSNIETGSLVVL-TVNDPNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGY 429
NI+ P+ ++ ET + +++ N P TY+ R++ +LL + + +L S+V
Sbjct: 6 NITPPNNSADKETDRKIPEESLSITNHPGATSTPTYMTRKRQRLLSLQMDSALSLSLVDR 65
Query: 430 VRKETTDSNASM----VSSPMTSASPNSVASMDSRISVTPLQVNPSPN 473
V + D SSP T P + A I TP +V+PS N
Sbjct: 66 VPQTFEDIRGRKGIRDASSPKTGKLPRTKA---RNIPKTPARVSPSIN 110
>AE014134-2642|AAN10915.1| 332|Drosophila melanogaster CG18518-PA
protein.
Length = 332
Score = 32.7 bits (71), Expect = 1.2
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 371 NISNPSMPSNIETGSLVVL-TVNDPNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGY 429
NI+ P+ ++ ET + +++ N P TY+ R++ +LL + + +L S+V
Sbjct: 6 NITPPNNSADKETDRKIPEESLSITNHPGATSTPTYMTRKRQRLLSLQMDSALSLSLVDR 65
Query: 430 VRKETTDSNASM----VSSPMTSASPNSVASMDSRISVTPLQVNPSPN 473
V + D SSP T P + A I TP +V+PS N
Sbjct: 66 VPQTFEDIRGRKGIRDASSPKTGKLPRTKA---RNIPKTPARVSPSIN 110
>AY122259-1|AAM52771.1| 2176|Drosophila melanogaster SD09011p
protein.
Length = 2176
Score = 31.5 bits (68), Expect = 2.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 443 SSPMTSASPNSVASMDSRISVTPLQVNPSPNKRQRKNSYT 482
SSP T+ ++ S + VTP+ P+P KR+R S T
Sbjct: 343 SSPATTTRATRLSKAGSPVIVTPVAQEPAPPKRRRVGSST 382
>AY069572-1|AAL39717.1| 510|Drosophila melanogaster LD31122p
protein.
Length = 510
Score = 31.1 bits (67), Expect = 3.6
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 370 DNISNPSMPSNIETGSLVVLTVNDPNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSV-VG 428
DN+ S+ + + T LV+L+ N N ++ +++ + +L +D PP +N V +
Sbjct: 367 DNVIVHSVDA-LPTPDLVILSTNTAN--LSDAIRKWLSVNRASVLAIDPPPCGINEVAIK 423
Query: 429 Y----VRKETTDSNASMVSSPMTSASPNSVASMDSRISVT 464
Y + S A+ SS +A+P +AS + S T
Sbjct: 424 YSILPILPLNGISTATTSSSSSAAATPTPIASTSAAASAT 463
>AY060416-1|AAL25455.1| 358|Drosophila melanogaster LD37618p
protein.
Length = 358
Score = 31.1 bits (67), Expect = 3.6
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 370 DNISNPSMPSNIETGSLVVLTVNDPNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSV-VG 428
DN+ S+ + + T LV+L+ N N ++ +++ + +L +D PP +N V +
Sbjct: 215 DNVIVHSVDA-LPTPDLVILSTNTAN--LSDAIRKWLSVNRASVLAIDPPPCGINEVAIK 271
Query: 429 Y----VRKETTDSNASMVSSPMTSASPNSVASMDSRISVT 464
Y + S A+ SS +A+P +AS + S T
Sbjct: 272 YSILPILPLNGISTATTSSSSSAAATPTPIASTSAAASAT 311
>AJ010073-1|CAB45234.1| 614|Drosophila melanogaster XRCC1 protein
protein.
Length = 614
Score = 31.1 bits (67), Expect = 3.6
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 430 VRKETTDSNASMVSSPMTSASPNSVASMDSRISVTPLQVNPSPNKR 475
+R+ + +S+ +SP TS SP+ V + +S TPL P R
Sbjct: 220 LRRLSAGKVSSLAASPKTSTSPSPVLNALRSVSPTPLDAKPLDRNR 265
>AF132142-1|AAD33589.1| 614|Drosophila melanogaster DNA repair
protein XRCC1 protein.
Length = 614
Score = 31.1 bits (67), Expect = 3.6
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 430 VRKETTDSNASMVSSPMTSASPNSVASMDSRISVTPLQVNPSPNKR 475
+R+ + +S+ +SP TS SP+ V + +S TPL P R
Sbjct: 220 LRRLSAGKVSSLAASPKTSTSPSPVLNALRSVSPTPLDAKPLDRNR 265
>AE014298-727|AAF46025.1| 614|Drosophila melanogaster CG4208-PA
protein.
Length = 614
Score = 31.1 bits (67), Expect = 3.6
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 430 VRKETTDSNASMVSSPMTSASPNSVASMDSRISVTPLQVNPSPNKR 475
+R+ + +S+ +SP TS SP+ V + +S TPL P R
Sbjct: 220 LRRLSAGKVSSLAASPKTSTSPSPVLNALRSVSPTPLDAKPLDRNR 265
>AE014296-2923|AAF49329.1| 680|Drosophila melanogaster CG6311-PB
protein.
Length = 680
Score = 31.1 bits (67), Expect = 3.6
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 370 DNISNPSMPSNIETGSLVVLTVNDPNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSV-VG 428
DN+ S+ + + T LV+L+ N N ++ +++ + +L +D PP +N V +
Sbjct: 537 DNVIVHSVDA-LPTPDLVILSTNTAN--LSDAIRKWLSVNRASVLAIDPPPCGINEVAIK 593
Query: 429 Y----VRKETTDSNASMVSSPMTSASPNSVASMDSRISVT 464
Y + S A+ SS +A+P +AS + S T
Sbjct: 594 YSILPILPLNGISTATTSSSSSAAATPTPIASTSAAASAT 633
>BT025128-1|ABE73299.1| 416|Drosophila melanogaster IP08460p
protein.
Length = 416
Score = 30.7 bits (66), Expect = 4.7
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 384 GSLVVLTVNDPNSPTKKMLQTYIAREKGKLLPVDLPPSL--LNSVVGYVRK-ETTDSNAS 440
GS+ V + P++P+K++ T + + ++P + L + VGY K + +AS
Sbjct: 276 GSIRVYEIPLPSTPSKQVTHTTVESRENNIIPSSRNDTTKSLQTDVGYAMKNDLYPGSAS 335
Query: 441 MVSSPMTSASPNSVASMDS 459
SS +S++ +S +SM +
Sbjct: 336 SSSSGGSSSAASSSSSMQT 354
>BT023562-1|AAY84962.1| 208|Drosophila melanogaster IP09703p
protein.
Length = 208
Score = 30.7 bits (66), Expect = 4.7
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 384 GSLVVLTVNDPNSPTKKMLQTYIAREKGKLLPVDLPPSL--LNSVVGYVRK-ETTDSNAS 440
GS+ V + P++P+K++ T + + ++P + L + VGY K + +AS
Sbjct: 68 GSIRVYEIPLPSTPSKQVTHTTVESRENNIIPSSRNDTTKSLQTDVGYAMKNDLYPGSAS 127
Query: 441 MVSSPMTSASPNSVASMDS 459
SS +S++ +S +SM +
Sbjct: 128 SSSSGGSSSAASSSSSMQT 146
>BT023547-1|AAY84947.1| 209|Drosophila melanogaster IP09803p
protein.
Length = 209
Score = 30.7 bits (66), Expect = 4.7
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 384 GSLVVLTVNDPNSPTKKMLQTYIAREKGKLLPVDLPPSL--LNSVVGYVRK-ETTDSNAS 440
GS+ V + P++P+K++ T + + ++P + L + VGY K + +AS
Sbjct: 69 GSIRVYEIPLPSTPSKQVTHTTVESRENNIIPSSRNDTTKSLQTDVGYAMKNDLYPGSAS 128
Query: 441 MVSSPMTSASPNSVASMDS 459
SS +S++ +S +SM +
Sbjct: 129 SSSSGGSSSAASSSSSMQT 147
>AY051964-1|AAK93388.1| 1266|Drosophila melanogaster LD43047p
protein.
Length = 1266
Score = 30.3 bits (65), Expect = 6.2
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
Query: 347 SKNSVSDMAVITKIDPKPANMLLDNISNPS-MPSNIETGSLVVLTVNDPNSPTKKMLQTY 405
S +V+ A I+ P +L + + P+ +P+ TGS+ L + P P K
Sbjct: 516 STTTVTSTATISTSAPSKPIILSNQVIKPADVPNTNSTGSVPKLVLGQPAPPAKTEQTPP 575
Query: 406 IAREKGKLLPVDLPPSLLNSVVGYVRKETTDSNASMVSSPMTSASPN 452
+K D+PP S V T+ +P ++A+P+
Sbjct: 576 KPIDKVPAAQADIPPKFELSTKP-VTPATSSQPLISFGTPKSTAAPS 621
>AL009192-2|CAA15686.1| 2342|Drosophila melanogaster EG:133E12.4
protein.
Length = 2342
Score = 30.3 bits (65), Expect = 6.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 443 SSPMTSASPNSVASMDSRISVTPLQVNPSPNKRQRKNSYT 482
SSP T+ ++ S + +TP+ P+P KR+R S T
Sbjct: 467 SSPATTTRATRLSKAGSPVILTPVAQEPAPPKRRRVGSST 506
>AF242291-1|AAF63753.1| 2362|Drosophila melanogaster nuclear protein
EAST protein.
Length = 2362
Score = 30.3 bits (65), Expect = 6.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 443 SSPMTSASPNSVASMDSRISVTPLQVNPSPNKRQRKNSYT 482
SSP T+ ++ S + +TP+ P+P KR+R S T
Sbjct: 520 SSPATTTRATRLSKAGSPVILTPVAQEPAPPKRRRVGSST 559
>AE014298-308|AAF45704.2| 2301|Drosophila melanogaster CG4399-PB
protein.
Length = 2301
Score = 30.3 bits (65), Expect = 6.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 443 SSPMTSASPNSVASMDSRISVTPLQVNPSPNKRQRKNSYT 482
SSP T+ ++ S + +TP+ P+P KR+R S T
Sbjct: 467 SSPATTTRATRLSKAGSPVILTPVAQEPAPPKRRRVGSST 506
>AE014297-1339|AAG22146.2| 1266|Drosophila melanogaster CG14712-PA
protein.
Length = 1266
Score = 30.3 bits (65), Expect = 6.2
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
Query: 347 SKNSVSDMAVITKIDPKPANMLLDNISNPS-MPSNIETGSLVVLTVNDPNSPTKKMLQTY 405
S +V+ A I+ P +L + + P+ +P+ TGS+ L + P P K
Sbjct: 516 STTTVTSTATISTSAPSKPIILSNQVIKPADVPNTNSTGSVPKLVLGQPAPPAKTEQTPP 575
Query: 406 IAREKGKLLPVDLPPSLLNSVVGYVRKETTDSNASMVSSPMTSASPN 452
+K D+PP S V T+ +P ++A+P+
Sbjct: 576 KPIDKVPAAQADIPPKFELSTKP-VTPATSSQPLISFGTPKSTAAPS 621
>BT023686-1|AAY85086.1| 185|Drosophila melanogaster IP04203p
protein.
Length = 185
Score = 29.9 bits (64), Expect = 8.2
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 355 AVITKIDPKPANMLLDNISNPSMP---SNIETGSLVVLTVN-----DPNSPTKKMLQTYI 406
A++ +PK + NI++PS P S++ G + L +N + +K + + +
Sbjct: 15 ALLGSFEPKRISSGPSNITSPSQPSMASHLPKGGALFLVLNLLLLSQWETESKLLTRCQL 74
Query: 407 AREKGKLLPVDLPPSLLNSVVGYVRKETTDSNASMVSSPMTSAS 450
A+E LL D P S L++ V V E+ S + + P S S
Sbjct: 75 AKE---LLRHDFPRSYLSNWVCLVEAESGRSTSKSMQLPNQSVS 115
Database: fruitfly
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 24,830,863
Number of sequences in database: 52,641
Lambda K H
0.310 0.125 0.347
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,857,127
Number of Sequences: 52641
Number of extensions: 574462
Number of successful extensions: 1968
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1953
Number of HSP's gapped (non-prelim): 26
length of query: 486
length of database: 24,830,863
effective HSP length: 88
effective length of query: 398
effective length of database: 20,198,455
effective search space: 8038985090
effective search space used: 8038985090
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 64 (29.9 bits)
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