Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001884-TA|BGIBMGA001884-PA|IPR001005|Myb, DNA-binding,
IPR009057|Homeodomain-like
(486 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97016-8|AAB52350.2| 779|Caenorhabditis elegans Hypothetical pr... 60 3e-09
Z83228-10|CAB05737.2| 539|Caenorhabditis elegans Hypothetical p... 35 0.15
U67079-1|AAB40716.1| 539|Caenorhabditis elegans C2-HC type zinc... 33 0.45
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 31 1.4
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 31 1.4
U41027-2|AAV28335.1| 447|Caenorhabditis elegans Hypothetical pr... 31 2.4
U41027-1|AAV28336.1| 480|Caenorhabditis elegans Hypothetical pr... 31 2.4
U00045-5|AAM29685.1| 132|Caenorhabditis elegans Hypothetical pr... 31 2.4
Z48334-4|CAB61010.2| 426|Caenorhabditis elegans Hypothetical pr... 30 3.2
AF143297-1|AAD33902.1| 426|Caenorhabditis elegans tubby homolog... 30 3.2
Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical pr... 29 7.4
AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein. 29 7.4
AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical ... 29 7.4
AC024805-15|AAK39331.2| 344|Caenorhabditis elegans Hypothetical... 29 9.7
AC024201-18|AAF36026.1| 430|Caenorhabditis elegans Hypothetical... 29 9.7
>U97016-8|AAB52350.2| 779|Caenorhabditis elegans Hypothetical
protein B0261.1 protein.
Length = 779
Score = 60.5 bits (140), Expect = 3e-09
Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Query: 114 PQIKLGPNGEIILDEQSLVIKQSN-NGRKVSSEVREGAWNER--SSGYRRSA--RTADWT 168
PQ+K+G +G +++DE SLV+ + N V V EG + S +R+ +++ W+
Sbjct: 205 PQVKIGADGRLVIDETSLVVHSAQINHESVWETVEEGRMGAKITSMSFRKRGFGKSSFWS 264
Query: 169 HDETVRFYRALAAIGTDFTLMEPLFPGRTRRDXXXXXXXXXXXNIAQVDKALRSRVEWD 227
ET FY L G DF LM P RTR + N A+V A+ V D
Sbjct: 265 EKETDLFYEVLQCTGQDFGLMSHYLPKRTRPELKAKYNREEKINWARVLNAISHPVRLD 323
>Z83228-10|CAB05737.2| 539|Caenorhabditis elegans Hypothetical
protein F52F12.6 protein.
Length = 539
Score = 34.7 bits (76), Expect = 0.15
Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 10/147 (6%)
Query: 324 EPGPGSTSSLATLSVRNNRKTQESKNSVSDMAVITKIDPKPANMLLDNISNPSMPSNIET 383
E + SS+ + S +T+E +N D P ++ S+PS +E
Sbjct: 72 EAAAATCSSIPSSSDTKENETEEDQNMTCDTTTNNAQKPTEQTATSADVVTSSVPSGLE- 130
Query: 384 GSLVVLTVNDPNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVV--GYVRKETTDSNAS- 440
G L +K L+ + + D PS ++SV+ G V E T S+ S
Sbjct: 131 GVPSFLFSQFMAPSFQKQLEIFTSGNMMSATHSDTSPSDVDSVLDGGVVTAEETSSSKSP 190
Query: 441 -MVSS-----PMTSASPNSVASMDSRI 461
M SS P+T++SP + +SR+
Sbjct: 191 MMTSSDTPKTPLTASSPPHSSGSESRV 217
>U67079-1|AAB40716.1| 539|Caenorhabditis elegans C2-HC type zinc
finger proteinC.e-MyT1 protein.
Length = 539
Score = 33.1 bits (72), Expect = 0.45
Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 10/147 (6%)
Query: 324 EPGPGSTSSLATLSVRNNRKTQESKNSVSDMAVITKIDPKPANMLLDNISNPSMPSNIET 383
E + SS+ + S +T+E +N D P ++ S+PS +E
Sbjct: 72 EAAAATCSSIPSSSDTKENETEEDQNMTCDTTTNNAQKPTEQTATSADVVTSSVPSGLE- 130
Query: 384 GSLVVLTVNDPNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVG---YVRKETTDSNAS 440
G L +K L+ + + D PS ++SV+ +ET+ S +
Sbjct: 131 GVPSFLFSQFMAPSFQKQLEIFTSGNMMSATHSDTSPSDVDSVLDGDVVTAEETSSSKSP 190
Query: 441 MVSS------PMTSASPNSVASMDSRI 461
M++S P+T++SP + +SR+
Sbjct: 191 MMTSSDTPKTPLTASSPPHSSGSESRV 217
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 31.5 bits (68), Expect = 1.4
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 394 PNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSNASM-VSSPMTSASPN 452
P T +L T I + ++ V +++ ++ T+ S S + S T+ S +
Sbjct: 365 PACKTTPVLTTTIPFKTCTMIAVSTTTPMISLTTESMQSTTSSSEISTTLDSSSTTGSVS 424
Query: 453 SVASM--DSRISVTPLQVNPSPNKRQRKNSYT 482
S S+ DS S TPL V+ SP++ S T
Sbjct: 425 STESVTSDSSDSTTPLDVSSSPSESTESQSST 456
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 31.5 bits (68), Expect = 1.4
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 394 PNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSNASM-VSSPMTSASPN 452
P T +L T I + ++ V +++ ++ T+ S S + S T+ S +
Sbjct: 365 PACKTTPVLTTTIPFKTCTMIAVSTTTPMISLTTESMQSTTSSSEISTTLDSSSTTGSVS 424
Query: 453 SVASM--DSRISVTPLQVNPSPNKRQRKNSYT 482
S S+ DS S TPL V+ SP++ S T
Sbjct: 425 STESVTSDSSDSTTPLDVSSSPSESTESQSST 456
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 31.5 bits (68), Expect = 1.4
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 394 PNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSNASM-VSSPMTSASPN 452
P T +L T I + ++ V +++ ++ T+ S S + S T+ S +
Sbjct: 365 PACKTTPVLTTTIPFKTCTMIAVSTTTPMISLTTESMQSTTSSSEISTTLDSSSTTGSVS 424
Query: 453 SVASM--DSRISVTPLQVNPSPNKRQRKNSYT 482
S S+ DS S TPL V+ SP++ S T
Sbjct: 425 STESVTSDSSDSTTPLDVSSSPSESTESQSST 456
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 31.5 bits (68), Expect = 1.4
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 394 PNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSNASM-VSSPMTSASPN 452
P T +L T I + ++ V +++ ++ T+ S S + S T+ S +
Sbjct: 365 PACKTTPVLTTTIPFKTCTMIAVSTTTPMISLTTESMQSTTSSSEISTTLDSSSTTGSVS 424
Query: 453 SVASM--DSRISVTPLQVNPSPNKRQRKNSYT 482
S S+ DS S TPL V+ SP++ S T
Sbjct: 425 STESVTSDSSDSTTPLDVSSSPSESTESQSST 456
>U41027-2|AAV28335.1| 447|Caenorhabditis elegans Hypothetical
protein R08E3.4a protein.
Length = 447
Score = 30.7 bits (66), Expect = 2.4
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 433 ETTDSNASMVSSPMTSASPNSVASMDSRISVTPLQVNPSPNKRQRKN 479
E T S+ S VS+P S +S + +S +S+T + +P+P K +N
Sbjct: 374 EQTSSSVS-VSAPSPSEQSHSPPANESSLSLTEKEKSPTPEKEDEEN 419
>U41027-1|AAV28336.1| 480|Caenorhabditis elegans Hypothetical
protein R08E3.4b protein.
Length = 480
Score = 30.7 bits (66), Expect = 2.4
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 433 ETTDSNASMVSSPMTSASPNSVASMDSRISVTPLQVNPSPNKRQRKN 479
E T S+ S VS+P S +S + +S +S+T + +P+P K +N
Sbjct: 374 EQTSSSVS-VSAPSPSEQSHSPPANESSLSLTEKEKSPTPEKEDEEN 419
>U00045-5|AAM29685.1| 132|Caenorhabditis elegans Hypothetical
protein F28F5.6 protein.
Length = 132
Score = 30.7 bits (66), Expect = 2.4
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Query: 328 GSTSSLATLSVRNNRKTQESKNSVSDMAVI---TKIDPKPANMLLDNISNPSMPSNIETG 384
G+T + SV++ + +S N + + T+I K + ++ I N S +E
Sbjct: 17 GTTEKASDESVKSQKPRTKSLNIPATNGSLREKTRIQVKRGSQVV--IRNRSQSVTVERK 74
Query: 385 SLVVLTVNDPNSPTKKMLQTYIAREKGKLLPVDLPPSLLNS 425
+ T + NSP+ + Y + G LP L P+L +S
Sbjct: 75 HVSRGTSDKQNSPSSRRQSHYTIHKGGNNLPTSLAPTLTSS 115
>Z48334-4|CAB61010.2| 426|Caenorhabditis elegans Hypothetical
protein F10B5.4 protein.
Length = 426
Score = 30.3 bits (65), Expect = 3.2
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 8/125 (6%)
Query: 336 LSVRNNRKTQESKNSVSDMAVITKIDPKPANMLLDNISNPSMPSNIETGSLVVLTVNDPN 395
L + +K +S SV + ++ DN S+P +I S V +++N P
Sbjct: 20 LEDKQKQKRHQSAGSVRTTSTAMSMNSMKDYPTFDN----SLPFSISDNSSVSVSMNTPL 75
Query: 396 SPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSNASMVSSPMTSASPNSVA 455
PT Q IA+ + + +P P + S++ D NA + +TS +
Sbjct: 76 IPT----QDPIAQPRMQSMPRQQPQQVQESLISIGDYPDNDINAKLSKVNLTSCVVSDDE 131
Query: 456 SMDSR 460
D R
Sbjct: 132 DEDKR 136
>AF143297-1|AAD33902.1| 426|Caenorhabditis elegans tubby homolog
protein.
Length = 426
Score = 30.3 bits (65), Expect = 3.2
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 8/125 (6%)
Query: 336 LSVRNNRKTQESKNSVSDMAVITKIDPKPANMLLDNISNPSMPSNIETGSLVVLTVNDPN 395
L + +K +S SV + ++ DN S+P +I S V +++N P
Sbjct: 20 LEDKQKQKRHQSAGSVRTTSTAMSMNSMKDYPTFDN----SLPFSISDNSSVSVSMNTPL 75
Query: 396 SPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSNASMVSSPMTSASPNSVA 455
PT Q IA+ + + +P P + S++ D NA + +TS +
Sbjct: 76 IPT----QDPIAQPRMQSMPRQQPQQVQESLISIGDYPDNDINAKLSKVNLTSCVVSDDE 131
Query: 456 SMDSR 460
D R
Sbjct: 132 DEDKR 136
>Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical
protein F22B5.7 protein.
Length = 1415
Score = 29.1 bits (62), Expect = 7.4
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 380 NIETGSLVVLT-VNDPNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSN 438
++ETG +L + PN K+ ++AR+ ++P P + +VV K T D++
Sbjct: 132 SLETGQEDILAALAKPNPQIKQQTALFVARQLDLVVPAKQPKGFIKAVVPVFGKLTGDAD 191
>AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.
Length = 1415
Score = 29.1 bits (62), Expect = 7.4
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 380 NIETGSLVVLT-VNDPNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSN 438
++ETG +L + PN K+ ++AR+ ++P P + +VV K T D++
Sbjct: 132 SLETGQEDILAALAKPNPQIKQQTALFVARQLDLVVPAKQPKGFIKAVVPVFGKLTGDAD 191
>AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical
protein Y51B11A.1 protein.
Length = 1079
Score = 29.1 bits (62), Expect = 7.4
Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 5/149 (3%)
Query: 324 EPGPGSTSSLATLSVRNNRKTQESKNSVSDMAVITKIDPKPANMLLDNISNPSMPSNIET 383
EP STS + T + T S S V T P + S+ + P T
Sbjct: 133 EPPSSSTSPVQTTTTTAPETTSTEAPSSSTTPVQTTTTTAPETTSTEPPSSSTSPVQTTT 192
Query: 384 GSLVVLTVNDP--NSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSNASM 441
+ T +P +S T T A E P + + + + T+ + S
Sbjct: 193 TTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTESPSS 252
Query: 442 VSSPM---TSASPNSVASMDSRISVTPLQ 467
++P+ T+ +P + ++ S TP+Q
Sbjct: 253 STTPVQTTTTTAPETTSTEPPSSSTTPVQ 281
Score = 29.1 bits (62), Expect = 7.4
Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 5/149 (3%)
Query: 324 EPGPGSTSSLATLSVRNNRKTQESKNSVSDMAVITKIDPKPANMLLDNISNPSMPSNIET 383
EP STS + T ++ T S S+ V T P + S+ + P T
Sbjct: 800 EPPSSSTSPVQTTTITAPETTSTEPPSSSNTPVQTTTTTAPETTSTEPPSSSTSPVQTTT 859
Query: 384 GSLVVLTVNDP--NSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSNASM 441
+ T +P +S T T A E P + + + + T+ S
Sbjct: 860 TTAPETTSTEPPSSSTTPVQTTTITAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSS 919
Query: 442 VSSPM---TSASPNSVASMDSRISVTPLQ 467
++P+ T +P + ++ S TP+Q
Sbjct: 920 STTPVQTTTITAPETTSTEPPSSSTTPVQ 948
>AC024805-15|AAK39331.2| 344|Caenorhabditis elegans Hypothetical
protein Y51H7C.13 protein.
Length = 344
Score = 28.7 bits (61), Expect = 9.7
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 108 TGAAPVPQIKLGPNGEIILDEQSLVIKQSNNGRKVSSEVREG 149
T A P+ +++GPNG +I+ S V + GR +S + +G
Sbjct: 70 TTARPIRIVRVGPNGRLIVTNCS-VCRLCCVGRNISYRIEDG 110
>AC024201-18|AAF36026.1| 430|Caenorhabditis elegans Hypothetical
protein Y71F9B.14 protein.
Length = 430
Score = 28.7 bits (61), Expect = 9.7
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 415 PVDLPPSLLNSVVGYVRKETTDSNASMVSSPMTSASPNSVASMDSRISVTP 465
P +PP+++ + TT S S P+TSA P VA+ D+ S P
Sbjct: 184 PRAIPPAVVTTEATQPEVATTLPEPSTTSEPLTSA-PRMVATTDAPKSTAP 233
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.310 0.125 0.347
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,350,322
Number of Sequences: 27539
Number of extensions: 281697
Number of successful extensions: 898
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 890
Number of HSP's gapped (non-prelim): 19
length of query: 486
length of database: 12,573,161
effective HSP length: 84
effective length of query: 402
effective length of database: 10,259,885
effective search space: 4124473770
effective search space used: 4124473770
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 61 (28.7 bits)
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