GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001884-TA|BGIBMGA001884-PA|IPR001005|Myb, DNA-binding,
IPR009057|Homeodomain-like
         (486 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   1.9  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    24   2.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   5.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   7.6  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 431 RKETTDSNASMVSSPMTSASP--NSVASMDSRISVTPLQVNPSPNK 474
           ++  T SN     +  T   P  N   S D  I V PL   P P+K
Sbjct: 333 KEPITQSNKRTAGNLATREHPSRNFTMSEDGMIEVIPLSAIPEPSK 378


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 421 SLLNSVVGYVRKETTDSNASMV 442
           S +N +VG+++K   DSN  +V
Sbjct: 18  SEINDIVGFLKKGPLDSNVEVV 39


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 10/40 (25%), Positives = 19/40 (47%)

Query: 422 LLNSVVGYVRKETTDSNASMVSSPMTSASPNSVASMDSRI 461
           +  S   Y+ KET D N  + + P ++   N+    ++ I
Sbjct: 453 MYKSYPNYIDKETKDMNLEISTRPKSNTVENACVLKNTEI 492


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 424 NSVVGYVRKETTDSNASMVSSPMTSASPNSVASMDSRISVTPLQVNPSPNKRQRKNSY 481
           NS  G       DS+ ++ S  + S S N+VA  +   ++ P +    P+  + +  +
Sbjct: 541 NSGNGNTNSSARDSSPAIESISVDSGSINTVAEWEPPRALWPTEWKVRPSTVEEREEF 598


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.125    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,591
Number of Sequences: 429
Number of extensions: 3687
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 486
length of database: 140,377
effective HSP length: 60
effective length of query: 426
effective length of database: 114,637
effective search space: 48835362
effective search space used: 48835362
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 45 (22.2 bits)