GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001884-TA|BGIBMGA001884-PA|IPR001005|Myb, DNA-binding,
IPR009057|Homeodomain-like
         (486 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39160.1 68417.m05546 myb family transcription factor contain...    38   0.020
At2g15300.1 68415.m01745 leucine-rich repeat transmembrane prote...    34   0.24 
At2g10440.1 68415.m01097 hypothetical protein                          31   2.3  
At3g46920.1 68416.m05092 protein kinase family protein similar t...    30   4.0  
At2g34680.1 68415.m04260 leucine-rich repeat family protein cont...    30   4.0  
At1g65920.1 68414.m07480 regulator of chromosome condensation (R...    29   6.9  
At4g31160.1 68417.m04423 transducin family protein / WD-40 repea...    29   9.1  
At3g08670.1 68416.m01007 expressed protein                             29   9.1  

>At4g39160.1 68417.m05546 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 545

 Score = 37.5 bits (83), Expect = 0.020
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 160 RSARTADWTHDETVRFYRALAAIGTDFTLMEPLFPGRTRRDXXXXXXXXXXXNIAQVDKA 219
           +++RT  W+ ++T  FY  +   G++ ++++ LFP RTR             N  +++ A
Sbjct: 387 KTSRTR-WSKEDTELFYEGIQEFGSNLSMIQQLFPERTREQMKLKFKLEERRNPLKLNDA 445

Query: 220 LRSR 223
           L SR
Sbjct: 446 LSSR 449


>At2g15300.1 68415.m01745 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 744

 Score = 33.9 bits (74), Expect = 0.24
 Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 5/155 (3%)

Query: 329 STSSLATLSVRNNRKTQESKNSVSDMAVITKIDPKPANMLLDNI-SNPSMPSNIETGSLV 387
           + S L  LS+ NN+ + E   S+S++A +  ++   AN L   I  N S+P N+   SL 
Sbjct: 122 NASELRILSLGNNKVSGELPRSISNVASLQLLN-LSANALTGKIPPNLSLPKNLTVISLA 180

Query: 388 VLTVNDPNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSNASMVSSPMT 447
             + +       + +Q  +      LL   LPP    + + Y+   + +  + M+S P  
Sbjct: 181 KNSFSGDIPSGFEAVQ--VLDISSNLLDGSLPPDFRGTSLLYLNL-SNNQISGMISPPFA 237

Query: 448 SASPNSVASMDSRISVTPLQVNPSPNKRQRKNSYT 482
              P S     S  ++T    N  P   Q+  S++
Sbjct: 238 EKFPASAIIDLSFNNLTGPIPNTPPLLNQKTESFS 272


>At2g10440.1 68415.m01097 hypothetical protein
          Length = 935

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 26/135 (19%), Positives = 57/135 (42%), Gaps = 1/135 (0%)

Query: 339 RNNRKTQESKNSVSDMAVIT-KIDPKPANMLLDNISNPSMPSNIETGSLVVLTVNDPNSP 397
           R +R    S+N  S +  I  K+DP+  N+++ +  N  +PS  +    V   ++   S 
Sbjct: 441 RRSRLMPSSQNEASSLLQIRPKLDPRDENIIMASSGNVMLPSVKQNPRAVNTNISSVQSL 500

Query: 398 TKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSNASMVSSPMTSASPNSVASM 457
            K+    +   ++ +    +    +  + +  VR     +  + +     S+S   V   
Sbjct: 501 QKQKRFHHRQMQQQQPQQGNHQHQMQTNEMNDVRMRERVNIKARLLEQQVSSSQRQVPKQ 560

Query: 458 DSRISVTPLQVNPSP 472
           +S +S + +Q + SP
Sbjct: 561 ESNVSSSQIQNHSSP 575


>At3g46920.1 68416.m05092 protein kinase family protein similar to
           MAP3K delta-1 protein kinase [Arabidopsis thaliana]
           GI:2253010; contains Pfam profile: PF00069 Eukaryotic
           protein kinase domain
          Length = 1171

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 415 PVDLPPSLLNSVVGYVRKETTDSNASMVSSPMTSASPNSVASMDSRISVTPLQVNP 470
           P+ L PS   S   + ++   DS  S+ S     A+  S+A ++S+IS TP+ +NP
Sbjct: 338 PIQLLPS---STSLFSQQPFQDSPLSVSSHQFLPAAHMSMAPLNSQISSTPVLINP 390


>At2g34680.1 68415.m04260 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; identical to cDNA hypothetical protein
           (AIR9) mRNA, partial cds GI:3695020
          Length = 1661

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 7/157 (4%)

Query: 325 PGPGSTSSLATLSVRNNRKTQESKNSVSDMAVITKIDPKPANMLLDNISNPSMPSNIETG 384
           P   ST++  T  VR +   +  K+SVS ++  T   P  +       S P  P +    
Sbjct: 99  PKQVSTTASRTDPVRRSLP-ELRKSSVSSLSAKTVSKPSLSE---SKKSVPVSPGSRSLT 154

Query: 385 SLVVLTVNDPNSPTKKMLQTYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSNA-SMVS 443
                +++ P S  +  +   ++ ++     VD   S  +S  G +    T     S VS
Sbjct: 155 KSTGFSLSKPESSARPAMSVSVSSKRAPSSSVDSSGSRTSS--GRLHSTLTSGRTVSKVS 212

Query: 444 SPMTSASPNSVASMDSRISVTPLQVNPSPNKRQRKNS 480
           SP   +SP+  +S+ S+   +PL    + + R++ ++
Sbjct: 213 SPSAGSSPSVSSSIRSKSFSSPLDRTSNFSGRKKTST 249


>At1g65920.1 68414.m07480 regulator of chromosome condensation
           (RCC1) family protein / zinc finger protein-related
           contains Pfam profiles: regulator of chromosome
           condensation (RCC1), PF01363 FYVE zinc finger
          Length = 1006

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 12/90 (13%)

Query: 363 KPANMLLDNIS-NPSMPSNIETGSLVV-----LTVNDPNSPTKKMLQTYIAREKGK---- 412
           KP+N L   I+ NPS  S I   S+ +     +T       TK+ ++  + +   +    
Sbjct: 864 KPSNPLKTGIACNPSQVSPIFDDSMSIPYLTPITTARSQHETKQHVEKCVTKSSNRDSNI 923

Query: 413 LLPVDLPPSLLNSVVGYVRKETTDSNASMV 442
            L VD  P++  +  GY++ ET DS+A  V
Sbjct: 924 KLLVDASPAITRT--GYLQNETQDSSAEQV 951


>At4g31160.1 68417.m04423 transducin family protein / WD-40 repeat
            family protein contains 2 WD-40 repeats (PF00400);
            KIAA0800 protein, Homo sapiens GI:3882321 EMBL:AB018343
          Length = 1846

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 16/113 (14%)

Query: 383  TGSLVVLTVNDPNSPTKKMLQ----------TYIAREKGKLLPVDLPPSLLNSVVGYVRK 432
            +G    LT +D  +PT + ++          TY ++E   L+   L  S L      + K
Sbjct: 1017 SGHATTLTASDAATPTLRRIERAAIAAATPITYDSKELLLLIHEHLQASGLGDTASALLK 1076

Query: 433  ETTDSNASMVSSPMTSASPNSVASMDSRISVTPLQVNPSPNKRQRKNSYTITP 485
            E     A +   P +SASP+S+A   ++   TPL     P+ R     +T  P
Sbjct: 1077 E-----AQLTPLP-SSASPSSIAYSTTQEMSTPLAQEQWPSGRANSGFFTSKP 1123


>At3g08670.1 68416.m01007 expressed protein 
          Length = 567

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 12/165 (7%)

Query: 329 STSSLATLSVRNNRKTQESKNSVSDMAVITKIDPKPANMLLDNISNPSMPSNI-ETGSLV 387
           S S  + LSV  +     S       +V     P  +     + ++   PS+I  T S  
Sbjct: 130 SASKASRLSVSQSESGYHSSRPARSSSVTR---PSISTSQYSSFTSGRSPSSILNTSSAS 186

Query: 388 VLTVNDPNSPTKKMLQ-------TYIAREKGKLLPVDLPPSLLNSVVGYVRKETTDSNAS 440
           V +   P+SP+ +          T  +       P  + P   +S +   R   +   ++
Sbjct: 187 VSSYIRPSSPSSRSSSSARPSTPTRTSSASRSSTPSRIRPGSSSSSMDKARPSLSSRPST 246

Query: 441 MVSSPMTSAS-PNSVASMDSRISVTPLQVNPSPNKRQRKNSYTIT 484
             S P  SAS PN +AS  +    TP + +PS       +  TI+
Sbjct: 247 PTSRPQLSASSPNIIASRPNSRPSTPTRRSPSSTSLSATSGPTIS 291


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.310    0.125    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,016,338
Number of Sequences: 28952
Number of extensions: 271359
Number of successful extensions: 884
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 882
Number of HSP's gapped (non-prelim): 9
length of query: 486
length of database: 12,070,560
effective HSP length: 84
effective length of query: 402
effective length of database: 9,638,592
effective search space: 3874713984
effective search space used: 3874713984
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 61 (28.7 bits)