GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001883-TA|BGIBMGA001883-PA|undefined
         (318 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    27   0.14 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   0.73 
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    25   0.73 
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   9.0  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   9.0  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   9.0  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   9.0  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    21   9.0  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    21   9.0  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 195 SDIPDDYSVPSVPESITEDPMD 216
           S  P D   PS P SI+EDP++
Sbjct: 54  SPTPGDVPTPSSPRSISEDPLN 75


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 77  NTDRQPHVNRAATPVNKGNITPKLS 101
           N DR   V R A P N+GN  PK S
Sbjct: 335 NIDRH-EVTRPAAPANRGNGFPKRS 358


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 85  NRAATPVNKGNITPKLSDRVSVITSTAGVKSGVFASPHAKSSP 127
           N++A  + K + TP +S   +  TS++     V A+PH + SP
Sbjct: 145 NKSAPILTKTSPTP-VSINNNTSTSSSASSPSVTAAPHLRDSP 186


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/36 (30%), Positives = 16/36 (44%)

Query: 132 IPSPVLAAMNTAEVTNKAVTPEKSDAKKNSDSTKSI 167
           I  P    ++  EV N+   P K    KNS  +K +
Sbjct: 484 IEKPAPVKISVQEVLNRVRKPTKKLHLKNSPISKKV 519


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 14  LPPRRKNAENSENKNQQGPSTNDLQNVPKSPNA 46
           +PP   +A  S + +    STN +QN   + N+
Sbjct: 317 IPPEPISASLSTSNSNSPSSTNLIQNEASNENS 349


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 144 EVTNKAVTPEKSDAKKNSDSTKSIGNNS 171
           E  NK VTP+ S  + +     +  NNS
Sbjct: 143 EEKNKVVTPKTSPNEASMSPQSTSSNNS 170


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 144 EVTNKAVTPEKSDAKKNSDSTKSIGNNS 171
           E  NK VTP+ S  + +     +  NNS
Sbjct: 163 EEKNKVVTPKTSPNEASMSPQSTSSNNS 190


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 14  LPPRRKNAENSENKNQQGPSTNDLQNVPKSPNA 46
           +PP   +A  S + +    STN +QN   + N+
Sbjct: 106 IPPEPISASLSTSNSNSPSSTNLIQNEASNENS 138


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 14  LPPRRKNAENSENKNQQGPSTNDLQNVPKSPNA 46
           +PP   +A  S + +    STN +QN   + N+
Sbjct: 106 IPPEPISASLSTSNSNSPSSTNLIQNEASNENS 138


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.306    0.122    0.337 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,635
Number of Sequences: 317
Number of extensions: 2572
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 318
length of database: 114,650
effective HSP length: 57
effective length of query: 261
effective length of database: 96,581
effective search space: 25207641
effective search space used: 25207641
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 43 (21.4 bits)