GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001883-TA|BGIBMGA001883-PA|undefined
         (318 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    27   0.16 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.29 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.5  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   6.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   8.1  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 27.5 bits (58), Expect = 0.16
 Identities = 25/138 (18%), Positives = 51/138 (36%), Gaps = 3/138 (2%)

Query: 39  NVPKSPNATKHDNVAKTYQRASVANSPSKSPHSSVITQNTDRQPHVNRAATPVNKGNITP 98
           N  +SPN+TK     K  + A+       S      ++  +   H       V   N+T 
Sbjct: 778 NKEQSPNSTKETTPKKERKTATTTQPVISSRKEQKKSEEKNINDHCVTTEQSVVVTNVTT 837

Query: 99  KLSDRVSVITSTAGVKSGVFASPHAKSSPLRKYIPSPVLAAMNTAEVTNKAVTPEKSDAK 158
            ++   + + S +G    + + P + +S     +   V+  + T   TN   TP K    
Sbjct: 838 TINTPTTSVISMSGTTVPITSLPASSTSINSITVEKDVINDVKTQITTN---TPAKKATN 894

Query: 159 KNSDSTKSIGNNSTEIIQ 176
                   + +++  ++Q
Sbjct: 895 IGGKPVAVVKSSAQSLLQ 912


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 6/91 (6%)

Query: 15  PPRRKNAENSENKNQQGPSTNDLQNVPKSPNATKHDNVAKTYQRASVANSPSKSPHSSVI 74
           P +++  +  + + Q+GP TND  N    PN    +  + + Q  ++   PS  P S+  
Sbjct: 841 PQQQQQQQQQQQQQQRGPMTNDDFN----PNI--EEEASDSAQGRAILKIPSYKPASTPG 894

Query: 75  TQNTDRQPHVNRAATPVNKGNITPKLSDRVS 105
             + + +P     A        +P L +R S
Sbjct: 895 CSSKNGEPTSAAFAQGFATAASSPGLLERAS 925



 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/30 (33%), Positives = 19/30 (63%)

Query: 15   PPRRKNAENSENKNQQGPSTNDLQNVPKSP 44
            P  R   ++SE+++ +GPS +  + VP+ P
Sbjct: 1340 PVPRLAQDSSEDESYRGPSASGGRPVPERP 1369


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 14/51 (27%), Positives = 21/51 (41%)

Query: 64  SPSKSPHSSVITQNTDRQPHVNRAATPVNKGNITPKLSDRVSVITSTAGVK 114
           SPS +   +  T  T R P  ++        N +       SVIT+T G +
Sbjct: 744 SPSPAEQCASTTTITARSPQGSQGLLQCATSNYSTTRWPATSVITTTTGAR 794


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 26  NKNQQGPSTNDLQNVPKSPNATKHDNVAKTY 56
           NKN+ G   ND ++        ++D   KT+
Sbjct: 105 NKNKDGDDNNDYEDNDYGNQDNRNDRRKKTF 135


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 58  RASVANSPSKSPHSSVITQNT 78
           R SVANSP+K+  S     N+
Sbjct: 685 RRSVANSPTKNADSREYRSNS 705


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.306    0.122    0.337 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,411
Number of Sequences: 429
Number of extensions: 3395
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 6
length of query: 318
length of database: 140,377
effective HSP length: 58
effective length of query: 260
effective length of database: 115,495
effective search space: 30028700
effective search space used: 30028700
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 44 (21.8 bits)