GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001882-TA|BGIBMGA001882-PA|IPR013621|Ion transport
N-terminal, IPR005821|Ion transport, IPR000595|Cyclic
nucleotide-binding, IPR003938|EAG/ELK/ERG potassium channel,
IPR002373|cAMP-dependent protein kinase
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subun...    72   2e-13
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    29   1.4  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    29   1.9  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    28   3.3  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    28   4.4  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    27   7.7  

>SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subunit
           Cgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 412

 Score = 72.1 bits (169), Expect = 2e-13
 Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 1/115 (0%)

Query: 380 SLVASVPFFANADSNFVSDVVTKLRYEVFQPGDIIIKEGTIGNKMYFIQEGIVDIVMANG 439
           SL+  VP  ++ D      +   L+  V+Q G I+I++G IGN+ Y I++G  ++V    
Sbjct: 271 SLLEEVPILSSLDKYQRQKIADALQTVVYQAGSIVIRQGDIGNQFYLIEDGEAEVVKNGK 330

Query: 440 EVATSLSDGSYFGEICLLTNARRVASVRAETYCNLFSLSVDHFNAVL-DQYPLMR 493
            V  +L+ G YFGE+ L+    R A+V+A+T   L +     FN +L +   LMR
Sbjct: 331 GVVVTLTKGDYFGELALIHETVRNATVQAKTRLKLATFDKPTFNRLLGNAIDLMR 385



 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 37/138 (26%), Positives = 70/138 (50%), Gaps = 17/138 (12%)

Query: 382 VASVPFFANADSNFVSDVVTKLRYE-VFQPGDIIIKEGTIGNKMYFIQEGIVDI------ 434
           VA    F N D    ++V+  +  + + + G  +I +G +G+  Y +++G  D+      
Sbjct: 138 VAGNFLFKNLDEEHYNEVLNAMTEKRIGEAGVAVIVQGAVGDYFYIVEQGEFDVYKRPEL 197

Query: 435 ------VMANG--EVATSLSDGSYFGEICLLTNARRVASVRAETYCN-LFSLSVDHFNAV 485
                 V+++G     T++S G YFGE+ L+ NA R ASV ++T  N +++L    F  +
Sbjct: 198 NITPEEVLSSGYGNYITTISPGEYFGELALMYNAPRAASVVSKTPNNVIYALDRTSFRRI 257

Query: 486 LDQYPLMRRTM-ESVAAE 502
           + +    +R + ES+  E
Sbjct: 258 VFENAYRQRMLYESLLEE 275


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 7/92 (7%)

Query: 280  SLTDMWLTMLSMISGATCYALFLGHATNLIQSLDSSRRQYREKVKQVEEYMAYRKLPREM 339
            SL D    + S +            + +L++++ S  ++ +EK+ QV+E        +E+
Sbjct: 1468 SLDDKSFELASAVEKLGALQKLHSESLSLMENIKSQLQEAKEKI-QVDESTI-----QEL 1521

Query: 340  RQRITEYFEHRYQGKFFDEEVILGELSEKLRE 371
               IT   ++ Y+GK  D++ I+ +LSE + +
Sbjct: 1522 DHEITAS-KNNYEGKLNDKDSIIRDLSENIEQ 1552


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/66 (25%), Positives = 32/66 (48%)

Query: 448 GSYFGEICLLTNARRVASVRAETYCNLFSLSVDHFNAVLDQYPLMRRTMESVAAERLNKI 507
           G   GE+ +L N RR +++ A     L  +    FNA+   +P +   +  + A R+N +
Sbjct: 708 GDSVGELEMLLNNRRSSTLFAIRDSELAKIPETLFNALSLSHPAVGLQLSKIIANRMNLL 767

Query: 508 GKNPNL 513
             N ++
Sbjct: 768 LNNKSM 773


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)

Query: 36  TIFLIDIVVNFRTGIMQQDNAEQVILDPKLIAKHYLRTWFFLDLISSIPLDYIFLIFNQD 95
           TI +I ++    +G+  +DN E +I DPK+   +    W +LDL     L Y++  F   
Sbjct: 426 TIKVIRVITT--SGLSNEDNPETLISDPKI---YTWWGWLYLDLKERRWL-YVYACFAHY 479

Query: 96  FS 97
           FS
Sbjct: 480 FS 481


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/51 (27%), Positives = 25/51 (49%)

Query: 288 MLSMISGATCYALFLGHATNLIQSLDSSRRQYREKVKQVEEYMAYRKLPRE 338
           M S++ G + +  F+  A  ++  L  S   YR  V+QV +   Y K  ++
Sbjct: 275 MESVVKGISLFDSFIPEALPILSDLLPSEENYRNLVRQVYDKDTYFKTKKD 325


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 204  ASVFMRIFNLICMMLLIGHWSGCLQFLVPML 234
            A +  RIFN  C  L    W+ C Q ++  L
Sbjct: 1047 AQILFRIFNSQCSKLGTNAWASCCQLVIMKL 1077


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.136    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,724
Number of Sequences: 5004
Number of extensions: 98749
Number of successful extensions: 255
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 249
Number of HSP's gapped (non-prelim): 8
length of query: 620
length of database: 2,362,478
effective HSP length: 77
effective length of query: 543
effective length of database: 1,977,170
effective search space: 1073603310
effective search space used: 1073603310
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)