Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001881-TA|BGIBMGA001881-PA|IPR013621|Ion transport
N-terminal
(90 letters)
Database: bee
429 sequences; 140,377 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 145 9e-38
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 145 9e-38
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 145 9e-38
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 23 0.59
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 20 5.5
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 20 5.5
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 20 5.5
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 19 7.3
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 19 9.6
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 145 bits (351), Expect = 9e-38
Identities = 71/85 (83%), Positives = 75/85 (88%), Gaps = 4/85 (4%)
Query: 8 GTGKVHFGGLDDVSLYGTPVE-PAP--PAPDAKQGFLRNQLQALFQPTDNKLAMKLFGSK 64
G+GKVHFG +DDVSLYGTP E P P P + KQ FL+NQLQALFQPTDNKLAMKLFGSK
Sbjct: 5 GSGKVHFG-VDDVSLYGTPKEEPGPGLPGQEVKQSFLKNQLQALFQPTDNKLAMKLFGSK 63
Query: 65 KALMKERIRQKAAGHWVIHPCSSFR 89
KALMKERIRQKAAGHWVIHPCSSFR
Sbjct: 64 KALMKERIRQKAAGHWVIHPCSSFR 88
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 145 bits (351), Expect = 9e-38
Identities = 71/85 (83%), Positives = 75/85 (88%), Gaps = 4/85 (4%)
Query: 8 GTGKVHFGGLDDVSLYGTPVE-PAP--PAPDAKQGFLRNQLQALFQPTDNKLAMKLFGSK 64
G+GKVHFG +DDVSLYGTP E P P P + KQ FL+NQLQALFQPTDNKLAMKLFGSK
Sbjct: 5 GSGKVHFG-VDDVSLYGTPKEEPGPGLPGQEVKQSFLKNQLQALFQPTDNKLAMKLFGSK 63
Query: 65 KALMKERIRQKAAGHWVIHPCSSFR 89
KALMKERIRQKAAGHWVIHPCSSFR
Sbjct: 64 KALMKERIRQKAAGHWVIHPCSSFR 88
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 145 bits (351), Expect = 9e-38
Identities = 71/85 (83%), Positives = 75/85 (88%), Gaps = 4/85 (4%)
Query: 8 GTGKVHFGGLDDVSLYGTPVE-PAP--PAPDAKQGFLRNQLQALFQPTDNKLAMKLFGSK 64
G+GKVHFG +DDVSLYGTP E P P P + KQ FL+NQLQALFQPTDNKLAMKLFGSK
Sbjct: 5 GSGKVHFG-VDDVSLYGTPKEEPGPGLPGQEVKQSFLKNQLQALFQPTDNKLAMKLFGSK 63
Query: 65 KALMKERIRQKAAGHWVIHPCSSFR 89
KALMKERIRQKAAGHWVIHPCSSFR
Sbjct: 64 KALMKERIRQKAAGHWVIHPCSSFR 88
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 23.0 bits (47), Expect = 0.59
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 25 TPVEPA-PPAPDAKQGFLRNQLQALFQPTDNKLAMKLFG 62
TP +PA PP P + G +L +F + AM L G
Sbjct: 337 TPPKPAPPPPPPSSSGPDSAKLDKIFDIATKENAMLLSG 375
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 19.8 bits (39), Expect = 5.5
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 54 NKLAMKLFGS 63
NKLAM L+GS
Sbjct: 502 NKLAMYLYGS 511
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 19.8 bits (39), Expect = 5.5
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 10 GKVHFGGLDDVSLYGTPVEPAPP 32
G+ G ++ + G+P P PP
Sbjct: 1841 GRRSVGSARNIPVSGSPEPPPPP 1863
Score = 19.0 bits (37), Expect = 9.6
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 4 KQGSGTGKVHFGGLDDVSLYGT 25
+ GS G H G D++ Y T
Sbjct: 1706 RMGSAEGLSHRGMEDEICPYAT 1727
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 19.8 bits (39), Expect = 5.5
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 9 TGKVHFGGLDDVSLYGTPVEPAPPAPDA 36
TG H+G D P E P P A
Sbjct: 276 TGLGHYGHHPDPGEVDLPPETQPTPPSA 303
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 19.4 bits (38), Expect = 7.3
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 59 KLFGSKKALMKERIRQK 75
KL+ K+ L++ER +K
Sbjct: 21 KLYNEKEKLLEERTSRK 37
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 19.0 bits (37), Expect = 9.6
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 29 PAPPAPDAKQGFL 41
P PP P + Q +L
Sbjct: 1357 PPPPPPSSGQAYL 1369
Database: bee
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 140,377
Number of sequences in database: 429
Lambda K H
0.319 0.135 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,182
Number of Sequences: 429
Number of extensions: 883
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 90
length of database: 140,377
effective HSP length: 48
effective length of query: 42
effective length of database: 119,785
effective search space: 5030970
effective search space used: 5030970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)
S2: 37 (19.0 bits)
- SilkBase 1999-2023 -