GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001881-TA|BGIBMGA001881-PA|IPR013621|Ion transport
N-terminal
         (90 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce...    27   0.32 
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    25   1.7  
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    23   7.0  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    23   7.0  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    23   9.2  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    23   9.2  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    23   9.2  

>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 318

 Score = 27.5 bits (58), Expect = 0.32
 Identities = 10/18 (55%), Positives = 14/18 (77%)

Query: 21  SLYGTPVEPAPPAPDAKQ 38
           S+Y + V+PAPP PD +Q
Sbjct: 155 SMYDSVVDPAPPMPDHEQ 172


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 7   SGTGKVHFGGLDDVSLYGTPVEPAPPAPDAKQG 39
           S T   H  G+   +    P  PAPP P + +G
Sbjct: 111 SRTSYDHSEGITSTTSASPPSAPAPPLPPSSEG 143


>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 68  MKERIRQKAAGHWVIHPCSS 87
           +KER R++ A  W++  C S
Sbjct: 194 LKERQRRRIALQWILGECKS 213


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 15  GGLDDVSLYGTPVEPAPPAPDAK 37
           GGL D+ L+  P    P   DAK
Sbjct: 404 GGLWDIELFRAPTIQKPAEKDAK 426


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 15  GGLDD-VSLYGTPVEPAPPAPDAKQGFLR 42
           G +D  +S+ G  +   P  PD KQ F R
Sbjct: 297 GDIDKLISIKGLVLRCTPVIPDMKQAFFR 325


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 9/34 (26%), Positives = 14/34 (41%)

Query: 2   SLKQGSGTGKVHFGGLDDVSLYGTPVEPAPPAPD 35
           S+ Q +     HF  L+  +      +P PP  D
Sbjct: 443 SILQDNSVSNAHFENLNSTNWQSMRFKPPPPGSD 476


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 19  DVSLYGTPVEPAPPAPD 35
           D      PVEP PP+P+
Sbjct: 223 DFEKMSPPVEPDPPSPE 239


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.135    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 406,829
Number of Sequences: 5004
Number of extensions: 13570
Number of successful extensions: 32
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 7
length of query: 90
length of database: 2,362,478
effective HSP length: 61
effective length of query: 29
effective length of database: 2,057,234
effective search space: 59659786
effective search space used: 59659786
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)