Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001881-TA|BGIBMGA001881-PA|IPR013621|Ion transport
N-terminal
(90 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55650| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 4e-09
SB_56059| Best HMM Match : Zw10 (HMM E-Value=0.37) 28 0.92
SB_39568| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.2
SB_23564| Best HMM Match : zf-CCHC (HMM E-Value=0.015) 27 2.1
SB_15344| Best HMM Match : Phage_30_3 (HMM E-Value=1.1) 27 2.8
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.8
SB_49909| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 6.5
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.6
SB_56083| Best HMM Match : DUF1620 (HMM E-Value=5.2) 25 8.6
SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.6
>SB_55650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1172
Score = 56.0 bits (129), Expect = 4e-09
Identities = 26/55 (47%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 36 AKQGFLRNQLQALFQPTDNKLAMKLFGSKKALMKERIRQKAAGHWVIHPCSSFRM 90
A Q + +L++ +P DNK+ MK+FGSK+A+ E++R AG WVIHP S FR+
Sbjct: 306 AFQSAIEMRLKSWLKPMDNKMNMKVFGSKRAMKDEQLRYSRAG-WVIHPTSIFRL 359
>SB_56059| Best HMM Match : Zw10 (HMM E-Value=0.37)
Length = 396
Score = 28.3 bits (60), Expect = 0.92
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 31 PPAPDAKQGFLRNQLQALFQPTDNKLA 57
P A D G +RN ++ALFQ TD + A
Sbjct: 362 PLAQDFSAGEIRNLIRALFQNTDRRAA 388
>SB_39568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 380
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 17 LDDVSLYGTPVEPAPPAPDAKQGFLRN 43
LDD S++ TP++ PP A+ G L N
Sbjct: 4 LDDKSVFETPIQALPPEIIAELGMLLN 30
>SB_23564| Best HMM Match : zf-CCHC (HMM E-Value=0.015)
Length = 667
Score = 27.1 bits (57), Expect = 2.1
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 14 FGGLDDVSLYGTPVEPAPPAPDAKQGFLRNQLQALFQPTDNK-LAMKLFGSKKALMKERI 72
+GG + L EP P A D ++ +L + F P NK LA F +K E I
Sbjct: 66 YGGPEIKKLARNIPEPTPSADDNDFTRMKRKLNSHFLPKKNKHLARYTFNKQKMETNESI 125
Query: 73 RQKAA 77
AA
Sbjct: 126 VTYAA 130
>SB_15344| Best HMM Match : Phage_30_3 (HMM E-Value=1.1)
Length = 367
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/46 (21%), Positives = 24/46 (52%)
Query: 37 KQGFLRNQLQALFQPTDNKLAMKLFGSKKALMKERIRQKAAGHWVI 82
+ +R+ L ++ NK+A+ K+ ++ + I A GH+++
Sbjct: 318 RMNVIRSHLHEMYTEEVNKVALSANDDKRVILDDGIHTYAHGHYLL 363
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 8/74 (10%)
Query: 14 FGGLDDVSLYGTPVEPAPPAPDAKQGFLRNQLQALFQPTDNKLAMKLFGSKKALMKERIR 73
+GG D+++ EP P Q ++ + Q D K +++ S L +
Sbjct: 1587 YGGHDNIAF-----EPEEPFDKPVQERIKEKAQ---HELDVKALARMYSSSPELKLKDYS 1638
Query: 74 QKAAGHWVIHPCSS 87
+ HWV PC +
Sbjct: 1639 LERGAHWVFQPCEA 1652
>SB_49909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 75
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 5 QGSGTGKVHFGGLDDVSLYG-TPVEPAPPAPDAKQG 39
Q G ++FGGL+ V L G T +P D+ G
Sbjct: 7 QSRGNADLNFGGLNSVQLIGYTGADPQSFGTDSHSG 42
>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3213
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 12 VHFGGLD----DVSLYGTPVEPAPPAP 34
+ F GLD D L G PV P PP P
Sbjct: 3109 LEFDGLDEGDVDDDLTGLPVAPPPPVP 3135
>SB_56083| Best HMM Match : DUF1620 (HMM E-Value=5.2)
Length = 287
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 29 PAPPAPDAKQGFLRNQLQALFQPTDNKLAMKLFGSKK 65
P PPAP A G R + ++PT+ A+ + +++
Sbjct: 237 PGPPAPAATNGQGRTVINRRWRPTNQGNALDVLRAQR 273
>SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2201
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 31 PPAPDAKQGFLRNQLQALFQPTDNKLAMKLFGSKKALMKER 71
PP +K F++N L A F P+ + + K+ ER
Sbjct: 1204 PPERFSKTQFMKNDLDASFNPSSQRALLPNSSLSKSHYMER 1244
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.135 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,099,952
Number of Sequences: 59808
Number of extensions: 109431
Number of successful extensions: 301
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 294
Number of HSP's gapped (non-prelim): 10
length of query: 90
length of database: 16,821,457
effective HSP length: 67
effective length of query: 23
effective length of database: 12,814,321
effective search space: 294729383
effective search space used: 294729383
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)
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