GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001881-TA|BGIBMGA001881-PA|IPR013621|Ion transport
N-terminal
         (90 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical pr...    28   0.70 
AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily a...    27   1.2  
AF003139-6|AAB54156.1|  327|Caenorhabditis elegans Collagen prot...    27   1.6  
Z81521-3|CAB04225.1|  353|Caenorhabditis elegans Hypothetical pr...    27   2.1  
Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical pr...    26   2.8  
Z79759-8|CAE45097.1|  619|Caenorhabditis elegans Hypothetical pr...    25   6.5  
AF040642-10|AAB94949.2|  576|Caenorhabditis elegans Hypothetical...    25   6.5  
AC024202-5|AAP86609.1|  827|Caenorhabditis elegans C. elegans AP...    25   6.5  
AC024202-3|AAF36038.2|  955|Caenorhabditis elegans C. elegans AP...    25   6.5  
Z35639-8|CAI46560.1|  634|Caenorhabditis elegans Hypothetical pr...    25   8.6  
Z35639-7|CAA84697.3|  959|Caenorhabditis elegans Hypothetical pr...    25   8.6  
AY669394-1|AAU05399.1|  487|Caenorhabditis elegans aromatic L-am...    25   8.6  
AY669393-1|AAU05398.1|  478|Caenorhabditis elegans aromatic L-am...    25   8.6  
AY571963-1|AAS78587.1|  959|Caenorhabditis elegans ATX-2 protein.      25   8.6  
AF047651-8|AAV58886.1|  514|Caenorhabditis elegans Biogenic amin...    25   8.6  
AF047651-7|AAC02721.2|  523|Caenorhabditis elegans Biogenic amin...    25   8.6  

>Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical
           protein ZK1010.8 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 0.70
 Identities = 15/58 (25%), Positives = 22/58 (37%)

Query: 23  YGTPVEPAPPAPDAKQGFLRNQLQALFQPTDNKLAMKLFGSKKALMKERIRQKAAGHW 80
           Y  P  P  P P  K  F   +   +  P   K   +   +K+    ERI++    HW
Sbjct: 293 YNVPPGPGAPGPSTKLDFYAPEPDQIGFPWKYKTMNETLRAKRETPAERIKKLYYQHW 350


>AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 168 protein.
          Length = 1347

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 18  DDVSLYGTPVEPAPPAPDAKQGFLRNQ 44
           DD+    T   PAPP P A +  LR Q
Sbjct: 890 DDIGKRRTTTNPAPPPPTAPEPALRRQ 916


>AF003139-6|AAB54156.1|  327|Caenorhabditis elegans Collagen protein
           45 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/36 (36%), Positives = 16/36 (44%)

Query: 4   KQGSGTGKVHFGGLDDVSLYGTPVEPAPPAPDAKQG 39
           K G+G  K   G   +   YG P +P  P PD   G
Sbjct: 275 KDGAGGEKGAPGDQGNPGPYGKPGQPGAPGPDGSAG 310


>Z81521-3|CAB04225.1|  353|Caenorhabditis elegans Hypothetical
           protein F32A11.3 protein.
          Length = 353

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 13  HFGGLDDVSL-----YGTPVE-PAPPAPDAKQGFLRNQLQAL 48
           ++GG  D+ L     Y T  + PA PAPD  +  L  QLQAL
Sbjct: 85  YYGGPSDIPLSYRVKYTTTQQAPASPAPDFTEQQLMAQLQAL 126


>Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical
           protein T20G5.5 protein.
          Length = 1234

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 42  RNQLQALFQPTDNKLAMKLFGSKKALMKERI 72
           R+ +  LF+ T N     LFGS  +L+ ERI
Sbjct: 170 RSLIHFLFRITSNLFVFILFGSCSSLLMERI 200


>Z79759-8|CAE45097.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK858.6 protein.
          Length = 619

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 59  KLFGSKKALMKERIRQKAAGHWVI 82
           KL     AL KERIRQ+ + H ++
Sbjct: 107 KLSKENVALFKERIRQEYSAHLIV 130


>AF040642-10|AAB94949.2|  576|Caenorhabditis elegans Hypothetical
           protein C50D2.1 protein.
          Length = 576

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 1   MSLKQGSGTGKVHFGGLDDVSLYGTPVEPAPPAPDAKQGFLRNQLQALFQPTDN 54
           M  + GS TGK+ FGGL ++ +     +       +K  F   QL AL   T+N
Sbjct: 129 MGERSGS-TGKMSFGGLGNIEMGNINEQGTGLLDFSKSLFPFLQLPALKNETEN 181


>AC024202-5|AAP86609.1|  827|Caenorhabditis elegans C. elegans APB-1
           protein, isoform c protein.
          Length = 827

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 6   GSGTGKVHFGGLDDVSLYGTPVEPAPPAP 34
           G+ +G    GGLDD  L G   +P P AP
Sbjct: 651 GAMSGTTSMGGLDD--LLGLGGDPMPAAP 677


>AC024202-3|AAF36038.2|  955|Caenorhabditis elegans C. elegans APB-1
           protein, isoform a protein.
          Length = 955

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 6   GSGTGKVHFGGLDDVSLYGTPVEPAPPAP 34
           G+ +G    GGLDD  L G   +P P AP
Sbjct: 651 GAMSGTTSMGGLDD--LLGLGGDPMPAAP 677


>Z35639-8|CAI46560.1|  634|Caenorhabditis elegans Hypothetical
           protein D2045.1b protein.
          Length = 634

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 14  FGGLDDVSLYGTPVEPAPPAPDAKQGFLRNQLQALFQP 51
           F G   V+  G    P PP P ++QG  R+Q  +   P
Sbjct: 597 FQGNQGVNPSGQQSGPPPPPPPSQQGTPRDQQHSQSPP 634


>Z35639-7|CAA84697.3|  959|Caenorhabditis elegans Hypothetical
           protein D2045.1a protein.
          Length = 959

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 14  FGGLDDVSLYGTPVEPAPPAPDAKQGFLRNQLQALFQP 51
           F G   V+  G    P PP P ++QG  R+Q  +   P
Sbjct: 922 FQGNQGVNPSGQQSGPPPPPPPSQQGTPRDQQHSQSPP 959


>AY669394-1|AAU05399.1|  487|Caenorhabditis elegans aromatic
          L-amino acid decarboxylase protein.
          Length = 487

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 17 LDDVSLYGTPVEPAPPAPDAKQGFLRNQLQALFQPTDNKLAMKLFGSKKALMKERIRQKA 76
          LD V+ Y   +    P PD K G++ + + A    T    A K+F        E +    
Sbjct: 14 LDFVADYWDGIRDRKPLPDVKPGYINDLVPAQAPATPEDWA-KIFDD-----LENVVVNG 67

Query: 77 AGHWVIHP 84
          A HW  HP
Sbjct: 68 ATHW-HHP 74


>AY669393-1|AAU05398.1|  478|Caenorhabditis elegans aromatic
          L-amino acid decarboxylase protein.
          Length = 478

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 17 LDDVSLYGTPVEPAPPAPDAKQGFLRNQLQALFQPTDNKLAMKLFGSKKALMKERIRQKA 76
          LD V+ Y   +    P PD K G++ + + A    T    A K+F        E +    
Sbjct: 14 LDFVADYWDGIRDRKPLPDVKPGYINDLVPAQAPATPEDWA-KIFDD-----LENVVVNG 67

Query: 77 AGHWVIHP 84
          A HW  HP
Sbjct: 68 ATHW-HHP 74


>AY571963-1|AAS78587.1|  959|Caenorhabditis elegans ATX-2 protein.
          Length = 959

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 14  FGGLDDVSLYGTPVEPAPPAPDAKQGFLRNQLQALFQP 51
           F G   V+  G    P PP P ++QG  R+Q  +   P
Sbjct: 922 FQGNQGVNPSGQQSGPPPPPPPSQQGTPRDQQHSQSPP 959


>AF047651-8|AAV58886.1|  514|Caenorhabditis elegans Biogenic amine
          synthesis relatedprotein 1, isoform a protein.
          Length = 514

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 17 LDDVSLYGTPVEPAPPAPDAKQGFLRNQLQALFQPTDNKLAMKLFGSKKALMKERIRQKA 76
          LD V+ Y   +    P PD K G++ + + A    T    A K+F        E +    
Sbjct: 14 LDFVADYWDGIRDRKPLPDVKPGYINDLVPAQAPATPEDWA-KIFDD-----LENVVVNG 67

Query: 77 AGHWVIHP 84
          A HW  HP
Sbjct: 68 ATHW-HHP 74


>AF047651-7|AAC02721.2|  523|Caenorhabditis elegans Biogenic amine
          synthesis relatedprotein 1, isoform b protein.
          Length = 523

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 17 LDDVSLYGTPVEPAPPAPDAKQGFLRNQLQALFQPTDNKLAMKLFGSKKALMKERIRQKA 76
          LD V+ Y   +    P PD K G++ + + A    T    A K+F        E +    
Sbjct: 14 LDFVADYWDGIRDRKPLPDVKPGYINDLVPAQAPATPEDWA-KIFDD-----LENVVVNG 67

Query: 77 AGHWVIHP 84
          A HW  HP
Sbjct: 68 ATHW-HHP 74


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.135    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,288,930
Number of Sequences: 27539
Number of extensions: 84405
Number of successful extensions: 294
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 284
Number of HSP's gapped (non-prelim): 17
length of query: 90
length of database: 12,573,161
effective HSP length: 69
effective length of query: 21
effective length of database: 10,672,970
effective search space: 224132370
effective search space used: 224132370
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)