GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001880-TA|BGIBMGA001880-PA|undefined
         (106 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64600-2|AAK39200.2|  519|Caenorhabditis elegans Twik family of ...    27   3.5  
AF083653-1|AAC32864.1|  484|Caenorhabditis elegans putative pota...    27   3.5  
L21758-1|AAA16827.1|  264|Caenorhabditis elegans osteonectin pro...    26   6.2  
AF036692-3|AAB88325.1|  264|Caenorhabditis elegans Osteonectin (...    26   6.2  
U64852-5|AAB04968.1|  746|Caenorhabditis elegans Hypothetical pr...    25   8.2  

>U64600-2|AAK39200.2|  519|Caenorhabditis elegans Twik family of
           potassium channelsprotein 26 protein.
          Length = 519

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 1   MRATLQRLAGLLPELDRYLSNYGIKANFTYSRDKLDADMKRYSKLMLE 48
           ++ T+  + G++ E    + N  +  N T   +KL   +KRY K MLE
Sbjct: 116 LKETIVLMQGIIDEETTDIINVTLSTNGTDRVNKLAKLIKRYYKTMLE 163


>AF083653-1|AAC32864.1|  484|Caenorhabditis elegans putative
           potassium channel subunitn2P26 protein.
          Length = 484

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 1   MRATLQRLAGLLPELDRYLSNYGIKANFTYSRDKLDADMKRYSKLMLE 48
           ++ T+  + G++ E    + N  +  N T   +KL   +KRY K MLE
Sbjct: 81  LKETIVLMQGIIDEETTDIINVTLSTNGTDRVNKLAKLIKRYYKTMLE 128


>L21758-1|AAA16827.1|  264|Caenorhabditis elegans osteonectin
           protein.
          Length = 264

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 76  IEELTDAYEVDQCGTEHLSAFRERL 100
           +E L +  ++D+C  EH++ F ER+
Sbjct: 129 LEYLGECKKLDECTEEHMAQFPERM 153


>AF036692-3|AAB88325.1|  264|Caenorhabditis elegans Osteonectin
           (sparc) related protein1 protein.
          Length = 264

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 76  IEELTDAYEVDQCGTEHLSAFRERL 100
           +E L +  ++D+C  EH++ F ER+
Sbjct: 129 LEYLGECKKLDECTEEHMAQFPERM 153


>U64852-5|AAB04968.1|  746|Caenorhabditis elegans Hypothetical
           protein W01A11.5 protein.
          Length = 746

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 17  RYLSNYGIKANFTYSRDKLDADMKRYSKLMLE 48
           R+  N+GI AN T      + D  +++KL+ E
Sbjct: 705 RFGGNHGIFANITSYHSAANTDSTKFAKLLSE 736


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.133    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,910,282
Number of Sequences: 27539
Number of extensions: 48164
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90
Number of HSP's gapped (non-prelim): 5
length of query: 106
length of database: 12,573,161
effective HSP length: 71
effective length of query: 35
effective length of database: 10,617,892
effective search space: 371626220
effective search space used: 371626220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)