GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001880-TA|BGIBMGA001880-PA|undefined
         (106 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   1.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   9.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    19   9.6  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 1.0
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 18  YLSNYGIKANFTYSRDKLDADMKRYSKLM-LEXXXXXXXXXXXXXXXXXXXR--AEMGNK 74
           YL N  +    T ++   D+D+++Y     LE                   R   + G K
Sbjct: 176 YLDNQEVSMENTENKSCTDSDIEKYKMFCNLENVKLKELRIILEDIKHINTRHNTKNGMK 235

Query: 75  TIEELTDAYEVDQ 87
           T+   TD +EV+Q
Sbjct: 236 TLLSETDIWEVEQ 248


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 81  DAYEVDQCGTEHLSAFRERL 100
           D Y+  QC T+H      RL
Sbjct: 174 DGYKTYQCRTKHRLTGETRL 193



 Score = 19.4 bits (38), Expect = 9.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 9    AGLLPELDRYLSNYG 23
            A   PE D+Y S YG
Sbjct: 1811 ANCAPEEDQYGSQYG 1825


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 31  SRDKLDADMKRYSKLMLE 48
           S  KLD +MKR  +L+ +
Sbjct: 380 SMRKLDEEMKRTDELLYQ 397


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.133    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,970
Number of Sequences: 429
Number of extensions: 541
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 106
length of database: 140,377
effective HSP length: 50
effective length of query: 56
effective length of database: 118,927
effective search space:  6659912
effective search space used:  6659912
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
S2: 38 (19.4 bits)