GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001880-TA|BGIBMGA001880-PA|undefined
         (106 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g35460.1 68414.m04398 basic helix-loop-helix (bHLH) family pr...    28   1.4  
At3g61680.1 68416.m06912 lipase class 3 family protein contains ...    27   2.5  
At3g32904.1 68416.m04164 hypothetical protein                          26   5.8  
At5g48880.2 68418.m06047 acetyl-CoA C-acyltransferase 1 / 3-keto...    25   7.7  
At5g48880.1 68418.m06046 acetyl-CoA C-acyltransferase 1 / 3-keto...    25   7.7  
At3g52970.1 68416.m05839 cytochrome P450 family protein cytochro...    25   7.7  

>At1g35460.1 68414.m04398 basic helix-loop-helix (bHLH) family
           protein similar to GI:6166283 from [Pinus taeda]
          Length = 259

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)

Query: 8   LAGLLPELDRYLSNYGIKANFTYSRDKLDADMKRYSKLM 46
           L+G     D Y SN+GI AN+ Y    +D    + S+ M
Sbjct: 106 LSGSGSGTDGYFSNFGIPANYDYLSTNVDISPTKRSRDM 144


>At3g61680.1 68416.m06912 lipase class 3 family protein contains
           Pfam profile PF01764: Lipase
          Length = 649

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 12  LPELDRYLSNYGIKANFTYSRDKLDADMKRYSKLML 47
           LPE+  +LS +G +A F ++   L   +     LML
Sbjct: 400 LPEITEHLSRHGDRAKFQFTGHSLGGSLSLIVNLML 435


>At3g32904.1 68416.m04164 hypothetical protein 
          Length = 330

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/30 (26%), Positives = 18/30 (60%)

Query: 15 LDRYLSNYGIKANFTYSRDKLDADMKRYSK 44
          LD++   + +  N+ + ++KLD   ++Y K
Sbjct: 18 LDKFNKEFNLNINYQFVKEKLDQLKRKYKK 47


>At5g48880.2 68418.m06047 acetyl-CoA C-acyltransferase 1 /
           3-ketoacyl-CoA thiolase 1 (PKT1) identical to
           3-keto-acyl-CoA-thiolase 1 [Arabidopsis thaliana]
           GI:3169568
          Length = 457

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 7   RLAGL-LPELDRYLSNYGIKANFTYSRDKLDADMKR 41
           +LAGL + ++D +  N    + + YS  KL+ DM++
Sbjct: 347 KLAGLNVSDIDLFEINEAFASQYVYSCKKLELDMEK 382


>At5g48880.1 68418.m06046 acetyl-CoA C-acyltransferase 1 /
           3-ketoacyl-CoA thiolase 1 (PKT1) identical to
           3-keto-acyl-CoA-thiolase 1 [Arabidopsis thaliana]
           GI:3169568
          Length = 414

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 7   RLAGL-LPELDRYLSNYGIKANFTYSRDKLDADMKR 41
           +LAGL + ++D +  N    + + YS  KL+ DM++
Sbjct: 304 KLAGLNVSDIDLFEINEAFASQYVYSCKKLELDMEK 339


>At3g52970.1 68416.m05839 cytochrome P450 family protein cytochrome
           P450 76A2, eggplant, PIR:S38534
          Length = 516

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 18  YLSNYGIKANFTYSRDKLDADMKRYSK 44
           +L  + +  N  +SRD LD D KR S+
Sbjct: 182 FLMAFNLIGNLMFSRDLLDPDSKRGSE 208


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.133    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,852,237
Number of Sequences: 28952
Number of extensions: 47467
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 91
Number of HSP's gapped (non-prelim): 6
length of query: 106
length of database: 12,070,560
effective HSP length: 71
effective length of query: 35
effective length of database: 10,014,968
effective search space: 350523880
effective search space used: 350523880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)