Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001879-TA|BGIBMGA001879-PA|undefined
         (266 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    24   1.0  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   2.4  

>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 131 DEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVE 167
           DE L  ++ PP PKP     V++  P    P   E E
Sbjct: 241 DEQLKELENPPTPKPRP-TKVSRRKPRPPRPTQVEEE 276


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 143 PKPDDHLPVNKESPERASPPLYE 165
           P+PD  +PV  E    ASP + E
Sbjct: 80  PEPDPEIPVAPEPAPLASPLVQE 102


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.137    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,450
Number of Sequences: 317
Number of extensions: 2109
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 266
length of database: 114,650
effective HSP length: 56
effective length of query: 210
effective length of database: 96,898
effective search space: 20348580
effective search space used: 20348580
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)