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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001879-TA|BGIBMGA001879-PA|undefined
         (266 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1054 - 25721220-25721582,25723163-25723727,25724162-257244...    31   0.73 
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716...    31   1.3  
05_01_0580 + 5210002-5210170,5210466-5210524,5210883-5211668,521...    30   2.2  
04_04_0648 - 26936123-26936447,26936540-26936841,26937043-269379...    30   2.2  
11_04_0255 - 15422536-15422640,15422734-15422790,15422917-154230...    29   2.9  
01_06_0246 + 27845898-27846001,27846235-27846237,27846472-278467...    29   2.9  
07_01_0015 + 108338-109186                                             29   5.1  
11_06_0610 - 25449085-25453284                                         28   6.8  
11_06_0114 - 20284840-20284844,20285280-20285402,20285504-20287937     28   6.8  
05_01_0187 + 1349725-1352238                                           28   6.8  
03_01_0430 + 3320198-3320215,3320496-3320642,3321157-3321268,332...    28   6.8  
01_05_0174 + 18919759-18920265,18920381-18920443,18921060-189217...    28   6.8  
04_04_0312 + 24314940-24315143,24316074-24316253,24316801-243170...    28   8.9  

>12_02_1054 -
           25721220-25721582,25723163-25723727,25724162-25724476,
           25724492-25724772
          Length = 507

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 2/86 (2%)

Query: 93  KAIEGFTGELASAFSDYHTVINNRHKLKVIPVLHCDEDDEDLDMMQWP-PVPKPDDHLPV 151
           + +   TG+   +     T+ + RH+ +       DEDD D +++Q+   + + DD  P 
Sbjct: 110 RLVNPVTGQQIDSLPPVDTIEHVRHRSQSAAAADDDEDDYDYEIVQYDWTMEQRDDRPPT 169

Query: 152 NKESPERASPPLYEVELTASDEDEDT 177
             ++ E A   +    L +SD   DT
Sbjct: 170 QAKADELAEYLIMRAFL-SSDPSSDT 194


>01_01_0908 +
           7158172-7158356,7159436-7159866,7159953-7161061,
           7161372-7162820
          Length = 1057

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 129 EDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDEDEDTSVLELVIPMQ 187
           ED+  +D+   P VP+   H+ VN      ++P L EV L   +EDE+    E ++  Q
Sbjct: 222 EDNTSVDVGALPEVPQITWHIEVNGADQPPSTPKLSEVVL-KRNEDENGKTEETLVAEQ 279


>05_01_0580 +
           5210002-5210170,5210466-5210524,5210883-5211668,
           5211898-5212737
          Length = 617

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 90  WLCKAI--EG-FTGELASAFSDYHTVINNRHKLKVIPVLHCDEDDE---DLDMMQWPPVP 143
           W CK I  EG F+ E+    S    + N   +L+V+      E+      L++ + PPVP
Sbjct: 272 WQCKEIITEGKFSAEVEEKLSKLEELENEARELRVVNSRLQQENAHLARRLELTRLPPVP 331

Query: 144 KPDDHLPV 151
           KP +++ V
Sbjct: 332 KPINNMEV 339


>04_04_0648 -
           26936123-26936447,26936540-26936841,26937043-26937915,
           26937995-26938108,26938285-26938612,26938719-26938843,
           26938926-26938991,26939099-26939166,26939262-26939343,
           26939433-26939546,26939647-26939747,26940429-26940678
          Length = 915

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/47 (31%), Positives = 25/47 (53%)

Query: 146 DDHLPVNKESPERASPPLYEVELTASDEDEDTSVLELVIPMQSSRYQ 192
           D+H+ V+K+S        ++V  T  DE   T   E+V  +Q+ R+Q
Sbjct: 406 DNHVHVSKQSSVSGRNFTFDVPQTCEDEQSTTESSEVVDSVQNFRFQ 452


>11_04_0255 -
           15422536-15422640,15422734-15422790,15422917-15423013,
           15423155-15423222,15423299-15423344,15423467-15423621,
           15423767-15423995,15424124-15424200,15425804-15425856,
           15426082-15426139
          Length = 314

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)

Query: 142 VPKPDDHLPV---NKESPERASPPLYEVELTASD 172
           +P+   HLPV    K + E A PP+Y VE+ A+D
Sbjct: 234 IPEASLHLPVVPLMKSTWEIAMPPIYSVEMDAAD 267


>01_06_0246 +
           27845898-27846001,27846235-27846237,27846472-27846700,
           27846814-27846968,27847091-27847136,27847233-27847324,
           27847425-27847521,27847649-27847705,27847799-27847927
          Length = 303

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)

Query: 142 VPKPDDHLPV---NKESPERASPPLYEVELTASD 172
           +P+   HLPV    K + E A PP+Y VE+ A+D
Sbjct: 215 IPEASLHLPVVPLMKSTWEIAMPPIYSVEMDAAD 248


>07_01_0015 + 108338-109186
          Length = 282

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 115 NRHKLKVIPVLHCDEDDED------LDMMQWPPVPKPDDHLPVNKESPERASPPLYEVEL 168
           N H+     +  CD+DD+D            PP P P   LP    +P+  SPP   +++
Sbjct: 76  NVHRRDRARLRQCDDDDDDPIPPTVSICAPPPPPPPPPPLLPAAAAAPDSPSPPSLLLQI 135

Query: 169 TA 170
           ++
Sbjct: 136 SS 137


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 140 PPVPKPDDHLPVNKES--PERASPPLYEVELTASDEDED 176
           PP P P+ H P   +S  PE  SPP+     T+    E+
Sbjct: 727 PPPPAPEGHTPSPPKSSPPEEKSPPIPPTSHTSPPTPEE 765


>11_06_0114 - 20284840-20284844,20285280-20285402,20285504-20287937
          Length = 853

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 122 IPVLHCDEDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDEDEDTSVLE 181
           I V H D  D+ L      P P P  +  V+      AS  L E++L  + E E  SV++
Sbjct: 339 IGVAHTDMMDKVLHWADLKPWPPPSGNGSVHFLISAHASVELQELDLAEAREGELLSVVD 398

Query: 182 L-VIPMQSSRY 191
           L  + M  S Y
Sbjct: 399 LWFVEMWHSGY 409


>05_01_0187 + 1349725-1352238
          Length = 837

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 122 IPVLHCDEDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDEDEDTSVLE 181
           I V H D  D+ L      P P P  +  V+      AS  L E++L  + E E  SV++
Sbjct: 302 IGVAHTDMMDKVLHWADLKPWPPPSGNGSVHFLISAHASVELQELDLAEAREGELLSVVD 361

Query: 182 L-VIPMQSSRY 191
           L  + M  S Y
Sbjct: 362 LWFVEMWHSGY 372


>03_01_0430 +
           3320198-3320215,3320496-3320642,3321157-3321268,
           3321389-3321504,3321557-3321671,3321791-3321915,
           3322145-3322215,3322308-3322368
          Length = 254

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 139 WPPVPKPDDHLPVNKESPER 158
           W P  +P DHLP  KE  E+
Sbjct: 222 WTPYNRPHDHLPARKEYVEK 241


>01_05_0174 +
           18919759-18920265,18920381-18920443,18921060-18921761,
           18922934-18923068,18923391-18923474,18924095-18924151,
           18924290-18924376,18924963-18925205
          Length = 625

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 128 DEDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDEDED 176
           D+DD+D      PP  KP    P +   P++  P    +   A+D+D+D
Sbjct: 15  DDDDDDAPAADAPPKAKPPPP-PSSSSGPKK--PKQRRLSSAAADDDDD 60


>04_04_0312 +
           24314940-24315143,24316074-24316253,24316801-24317030,
           24317205-24317375,24317685-24317790,24318099-24318305,
           24318646-24318806,24319001-24319103
          Length = 453

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 131 DEDLDMMQWPPVPKPDDHL 149
           D+ +   ++PP+PKPD H+
Sbjct: 307 DDGMKWKEFPPMPKPDSHI 325


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.137    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,244,681
Number of Sequences: 37544
Number of extensions: 295757
Number of successful extensions: 911
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 887
Number of HSP's gapped (non-prelim): 32
length of query: 266
length of database: 14,793,348
effective HSP length: 81
effective length of query: 185
effective length of database: 11,752,284
effective search space: 2174172540
effective search space used: 2174172540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)

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