GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001879-TA|BGIBMGA001879-PA|undefined
         (266 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    28   1.2  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    27   2.1  
SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom...    27   2.8  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   3.7  

>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 104 SAFSDYHTVINNRHKLKVIPVLHCDEDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPL 163
           S F+D  +++ N+ K +++  +  + D +        P PK D + P   E  +R +  L
Sbjct: 146 SLFNDAISIVPNKKK-QLVSAISTNSDSQGASS-NIIPTPKYDSNSPAGHELRKRMTHLL 203

Query: 164 YEVELTASDEDEDTSVLELV 183
           YE        + ++S+L L+
Sbjct: 204 YESYKDLGYSNAESSMLALL 223


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 161 PPLYEVELTASDEDEDTSVLELVIPMQ 187
           P LY++  T S + ED S  ELV P++
Sbjct: 7   PRLYDMSPTESKKQEDVSETELVYPVE 33


>SPCC330.10 |pcm1||mRNA capping
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 389

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 154 ESPERASPPLYEVELTASDEDEDTSVLELVIPMQSSR 190
           ESP R+  P Y ++     ED  T V E V+P ++ R
Sbjct: 285 ESPPRSFRPPYGIQYYFYLEDAVTDVPEYVVPFEAFR 321


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 128  DEDDEDLDMMQWPPVPKPDDHLPV-------NKESPERASPPLYEVELTASDEDEDTSVL 180
            DE   D+      P P+ +DHL +        KE        L ++++ A+DE+++ +  
Sbjct: 4063 DEIQPDIQENNSQPPPENEDHLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADA 4122

Query: 181  ELVIPMQ 187
            E   PMQ
Sbjct: 4123 EKDEPMQ 4129


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.137    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,093,738
Number of Sequences: 5004
Number of extensions: 41827
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 110
Number of HSP's gapped (non-prelim): 4
length of query: 266
length of database: 2,362,478
effective HSP length: 72
effective length of query: 194
effective length of database: 2,002,190
effective search space: 388424860
effective search space used: 388424860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)