Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001879-TA|BGIBMGA001879-PA|undefined
(266 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1054 - 25721220-25721582,25723163-25723727,25724162-257244... 31 0.73
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716... 31 1.3
05_01_0580 + 5210002-5210170,5210466-5210524,5210883-5211668,521... 30 2.2
04_04_0648 - 26936123-26936447,26936540-26936841,26937043-269379... 30 2.2
11_04_0255 - 15422536-15422640,15422734-15422790,15422917-154230... 29 2.9
01_06_0246 + 27845898-27846001,27846235-27846237,27846472-278467... 29 2.9
07_01_0015 + 108338-109186 29 5.1
11_06_0610 - 25449085-25453284 28 6.8
11_06_0114 - 20284840-20284844,20285280-20285402,20285504-20287937 28 6.8
05_01_0187 + 1349725-1352238 28 6.8
03_01_0430 + 3320198-3320215,3320496-3320642,3321157-3321268,332... 28 6.8
01_05_0174 + 18919759-18920265,18920381-18920443,18921060-189217... 28 6.8
04_04_0312 + 24314940-24315143,24316074-24316253,24316801-243170... 28 8.9
>12_02_1054 -
25721220-25721582,25723163-25723727,25724162-25724476,
25724492-25724772
Length = 507
Score = 31.5 bits (68), Expect = 0.73
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 93 KAIEGFTGELASAFSDYHTVINNRHKLKVIPVLHCDEDDEDLDMMQWP-PVPKPDDHLPV 151
+ + TG+ + T+ + RH+ + DEDD D +++Q+ + + DD P
Sbjct: 110 RLVNPVTGQQIDSLPPVDTIEHVRHRSQSAAAADDDEDDYDYEIVQYDWTMEQRDDRPPT 169
Query: 152 NKESPERASPPLYEVELTASDEDEDT 177
++ E A + L +SD DT
Sbjct: 170 QAKADELAEYLIMRAFL-SSDPSSDT 194
>01_01_0908 +
7158172-7158356,7159436-7159866,7159953-7161061,
7161372-7162820
Length = 1057
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 129 EDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDEDEDTSVLELVIPMQ 187
ED+ +D+ P VP+ H+ VN ++P L EV L +EDE+ E ++ Q
Sbjct: 222 EDNTSVDVGALPEVPQITWHIEVNGADQPPSTPKLSEVVL-KRNEDENGKTEETLVAEQ 279
>05_01_0580 +
5210002-5210170,5210466-5210524,5210883-5211668,
5211898-5212737
Length = 617
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 90 WLCKAI--EG-FTGELASAFSDYHTVINNRHKLKVIPVLHCDEDDE---DLDMMQWPPVP 143
W CK I EG F+ E+ S + N +L+V+ E+ L++ + PPVP
Sbjct: 272 WQCKEIITEGKFSAEVEEKLSKLEELENEARELRVVNSRLQQENAHLARRLELTRLPPVP 331
Query: 144 KPDDHLPV 151
KP +++ V
Sbjct: 332 KPINNMEV 339
>04_04_0648 -
26936123-26936447,26936540-26936841,26937043-26937915,
26937995-26938108,26938285-26938612,26938719-26938843,
26938926-26938991,26939099-26939166,26939262-26939343,
26939433-26939546,26939647-26939747,26940429-26940678
Length = 915
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 146 DDHLPVNKESPERASPPLYEVELTASDEDEDTSVLELVIPMQSSRYQ 192
D+H+ V+K+S ++V T DE T E+V +Q+ R+Q
Sbjct: 406 DNHVHVSKQSSVSGRNFTFDVPQTCEDEQSTTESSEVVDSVQNFRFQ 452
>11_04_0255 -
15422536-15422640,15422734-15422790,15422917-15423013,
15423155-15423222,15423299-15423344,15423467-15423621,
15423767-15423995,15424124-15424200,15425804-15425856,
15426082-15426139
Length = 314
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 142 VPKPDDHLPV---NKESPERASPPLYEVELTASD 172
+P+ HLPV K + E A PP+Y VE+ A+D
Sbjct: 234 IPEASLHLPVVPLMKSTWEIAMPPIYSVEMDAAD 267
>01_06_0246 +
27845898-27846001,27846235-27846237,27846472-27846700,
27846814-27846968,27847091-27847136,27847233-27847324,
27847425-27847521,27847649-27847705,27847799-27847927
Length = 303
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 142 VPKPDDHLPV---NKESPERASPPLYEVELTASD 172
+P+ HLPV K + E A PP+Y VE+ A+D
Sbjct: 215 IPEASLHLPVVPLMKSTWEIAMPPIYSVEMDAAD 248
>07_01_0015 + 108338-109186
Length = 282
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 115 NRHKLKVIPVLHCDEDDED------LDMMQWPPVPKPDDHLPVNKESPERASPPLYEVEL 168
N H+ + CD+DD+D PP P P LP +P+ SPP +++
Sbjct: 76 NVHRRDRARLRQCDDDDDDPIPPTVSICAPPPPPPPPPPLLPAAAAAPDSPSPPSLLLQI 135
Query: 169 TA 170
++
Sbjct: 136 SS 137
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 140 PPVPKPDDHLPVNKES--PERASPPLYEVELTASDEDED 176
PP P P+ H P +S PE SPP+ T+ E+
Sbjct: 727 PPPPAPEGHTPSPPKSSPPEEKSPPIPPTSHTSPPTPEE 765
>11_06_0114 - 20284840-20284844,20285280-20285402,20285504-20287937
Length = 853
Score = 28.3 bits (60), Expect = 6.8
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 122 IPVLHCDEDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDEDEDTSVLE 181
I V H D D+ L P P P + V+ AS L E++L + E E SV++
Sbjct: 339 IGVAHTDMMDKVLHWADLKPWPPPSGNGSVHFLISAHASVELQELDLAEAREGELLSVVD 398
Query: 182 L-VIPMQSSRY 191
L + M S Y
Sbjct: 399 LWFVEMWHSGY 409
>05_01_0187 + 1349725-1352238
Length = 837
Score = 28.3 bits (60), Expect = 6.8
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 122 IPVLHCDEDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDEDEDTSVLE 181
I V H D D+ L P P P + V+ AS L E++L + E E SV++
Sbjct: 302 IGVAHTDMMDKVLHWADLKPWPPPSGNGSVHFLISAHASVELQELDLAEAREGELLSVVD 361
Query: 182 L-VIPMQSSRY 191
L + M S Y
Sbjct: 362 LWFVEMWHSGY 372
>03_01_0430 +
3320198-3320215,3320496-3320642,3321157-3321268,
3321389-3321504,3321557-3321671,3321791-3321915,
3322145-3322215,3322308-3322368
Length = 254
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 139 WPPVPKPDDHLPVNKESPER 158
W P +P DHLP KE E+
Sbjct: 222 WTPYNRPHDHLPARKEYVEK 241
>01_05_0174 +
18919759-18920265,18920381-18920443,18921060-18921761,
18922934-18923068,18923391-18923474,18924095-18924151,
18924290-18924376,18924963-18925205
Length = 625
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 128 DEDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDEDED 176
D+DD+D PP KP P + P++ P + A+D+D+D
Sbjct: 15 DDDDDDAPAADAPPKAKPPPP-PSSSSGPKK--PKQRRLSSAAADDDDD 60
>04_04_0312 +
24314940-24315143,24316074-24316253,24316801-24317030,
24317205-24317375,24317685-24317790,24318099-24318305,
24318646-24318806,24319001-24319103
Length = 453
Score = 27.9 bits (59), Expect = 8.9
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 131 DEDLDMMQWPPVPKPDDHL 149
D+ + ++PP+PKPD H+
Sbjct: 307 DDGMKWKEFPPMPKPDSHI 325
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.137 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,244,681
Number of Sequences: 37544
Number of extensions: 295757
Number of successful extensions: 911
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 887
Number of HSP's gapped (non-prelim): 32
length of query: 266
length of database: 14,793,348
effective HSP length: 81
effective length of query: 185
effective length of database: 11,752,284
effective search space: 2174172540
effective search space used: 2174172540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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