GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001879-TA|BGIBMGA001879-PA|undefined
         (266 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36661| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_24365| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_24364| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_36661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 463

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 8/128 (6%)

Query: 69  PILKHCDEELACRTKIASLVV-WLCKAIEGFTGELASAFSDYHTV-INNRHKLKVIPVLH 126
           P+LKH ++      K ASLVV  +C A++ F  +   A  D     I   H+ KV PV  
Sbjct: 179 PLLKHIEKRKFFTEKEASLVVNDICSALD-FLHKQGIAHRDLKPENILCSHENKVSPVKI 237

Query: 127 CDEDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPL---YEVELTASDEDEDTSVLELV 183
           CD D          PV  P+   PV   S E  +P +   ++ + +  D+  D   L ++
Sbjct: 238 CDFDLASGIGGLTTPVTTPELQTPVG--SAEYMAPEVVDAFKTQASTYDKKCDLWSLGVI 295

Query: 184 IPMQSSRY 191
           + +  S Y
Sbjct: 296 LYIMLSGY 303


>SB_24365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 13/49 (26%)

Query: 128 DEDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDEDED 176
           DEDD D +        +PDD  PV+   P   S P  E E+T++DEDED
Sbjct: 400 DEDDGDYE--------EPDDDQPVH---PSHYSVP--EDEITSADEDED 435


>SB_24364| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 648

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 5/33 (15%)

Query: 144 KPDDHLPVNKESPERASPPLYEVELTASDEDED 176
           +PDD  PV+   P   S P  E E+T++DEDED
Sbjct: 175 EPDDDQPVH---PSHYSVP--EDEITSADEDED 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.137    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,265,919
Number of Sequences: 59808
Number of extensions: 327475
Number of successful extensions: 790
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 790
Number of HSP's gapped (non-prelim): 3
length of query: 266
length of database: 16,821,457
effective HSP length: 81
effective length of query: 185
effective length of database: 11,977,009
effective search space: 2215746665
effective search space used: 2215746665
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)