GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001879-TA|BGIBMGA001879-PA|undefined
         (266 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00031-7|AAK18870.2|  422|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U58755-16|AAB00705.2|  512|Caenorhabditis elegans Hypothetical p...    29   2.6  
Z79601-6|CAB01887.1|  872|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z79596-7|CAB01859.1|  872|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu...    28   7.9  
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu...    28   7.9  

>U00031-7|AAK18870.2|  422|Caenorhabditis elegans Hypothetical
           protein B0361.7 protein.
          Length = 422

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 137 MQWPPVPKPDDHLPVNKESPERASPPLYEVELTA 170
           + W P+P      P +KE  E AS P  E+E+ A
Sbjct: 128 LMWQPIPVHTISKPTDKELYEEASCPTAEIEMNA 161


>U58755-16|AAB00705.2|  512|Caenorhabditis elegans Hypothetical
           protein C34D4.1 protein.
          Length = 512

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 145 PDDHLPVNKESPERASPPLYEVELTASDEDEDTSVLEL 182
           P   +P++ +SP R S P  E+ +  S E+  T  +E+
Sbjct: 125 PTTSVPIHFDSPRRESRPCLEIHVEESPEELSTHAVEI 162


>Z79601-6|CAB01887.1|  872|Caenorhabditis elegans Hypothetical
           protein K09A9.6 protein.
          Length = 872

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/48 (27%), Positives = 25/48 (52%)

Query: 129 EDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDEDED 176
           EDD+D D    PP P P       +++ ++ +      ++T SD+++D
Sbjct: 97  EDDDDDDDDDEPPTPSPRVSKKQEQQTTQQKTTQPAAAQVTDSDDEDD 144


>Z79596-7|CAB01859.1|  872|Caenorhabditis elegans Hypothetical
           protein K09A9.6 protein.
          Length = 872

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/48 (27%), Positives = 25/48 (52%)

Query: 129 EDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDEDED 176
           EDD+D D    PP P P       +++ ++ +      ++T SD+++D
Sbjct: 97  EDDDDDDDDDEPPTPSPRVSKKQEQQTTQQKTTQPAAAQVTDSDDEDD 144


>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform a
           protein.
          Length = 1081

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/62 (25%), Positives = 25/62 (40%)

Query: 123 PVLHCDEDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDEDEDTSVLEL 182
           PV H     ++    +     + DD +PV K+     SP   E    +  EDED  +   
Sbjct: 815 PVRHPKRRSDEKREKRHVSYAESDDDMPVVKKKRRNQSPEDPEYSAASPSEDEDDDIGSF 874

Query: 183 VI 184
           V+
Sbjct: 875 VV 876


>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform b
           protein.
          Length = 1647

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/62 (25%), Positives = 25/62 (40%)

Query: 123 PVLHCDEDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDEDEDTSVLEL 182
           PV H     ++    +     + DD +PV K+     SP   E    +  EDED  +   
Sbjct: 815 PVRHPKRRSDEKREKRHVSYAESDDDMPVVKKKRRNQSPEDPEYSAASPSEDEDDDIGSF 874

Query: 183 VI 184
           V+
Sbjct: 875 VV 876


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.137    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,073,808
Number of Sequences: 27539
Number of extensions: 244068
Number of successful extensions: 744
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 732
Number of HSP's gapped (non-prelim): 12
length of query: 266
length of database: 12,573,161
effective HSP length: 80
effective length of query: 186
effective length of database: 10,370,041
effective search space: 1928827626
effective search space used: 1928827626
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)