Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001879-TA|BGIBMGA001879-PA|undefined
(266 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g32250.2 68415.m03942 far-red impaired responsive protein, pu... 31 1.1
At2g32250.1 68415.m03941 far-red impaired responsive protein, pu... 31 1.1
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli... 30 1.4
At3g62680.1 68416.m07041 proline-rich family protein contains pr... 30 1.9
At5g17980.1 68418.m02109 C2 domain-containing protein contains I... 29 2.4
At3g22070.1 68416.m02785 proline-rich family protein contains pr... 29 2.4
At1g54440.1 68414.m06210 3'-5' exonuclease domain-containing pro... 29 3.2
At1g26795.1 68414.m03262 self-incompatibility protein-related si... 29 3.2
At5g25520.2 68418.m03037 transcription elongation factor-related... 29 4.3
At3g27260.1 68416.m03407 DNA-binding bromodomain-containing prot... 28 5.7
At1g51540.1 68414.m05801 kelch repeat-containing protein contain... 28 7.5
At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger) fa... 27 9.9
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 27 9.9
At3g07730.1 68416.m00933 expressed protein 27 9.9
At2g25430.1 68415.m03046 epsin N-terminal homology (ENTH) domain... 27 9.9
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea... 27 9.9
>At2g32250.2 68415.m03942 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
contains Pfam:PF03101 domain: FAR1 family
Length = 805
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 1 MATQKGVKLAAEEEDHGLLLPLFTEPED 28
+A +KG++LA EEED LLL F E +D
Sbjct: 155 LAIKKGLQLALEEEDLKLLLEHFMEMQD 182
>At2g32250.1 68415.m03941 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
contains Pfam:PF03101 domain: FAR1 family
Length = 807
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 1 MATQKGVKLAAEEEDHGLLLPLFTEPED 28
+A +KG++LA EEED LLL F E +D
Sbjct: 155 LAIKKGLQLALEEEDLKLLLEHFMEMQD 182
>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
helicase, putative
Length = 2172
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 125 LHCDEDDE--DLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDEDEDTSVLEL 182
L C+EDD+ DLDM+Q + +D + +NK + + + + ED +VL++
Sbjct: 215 LECEEDDDESDLDMVQDEKDEEDEDVVELNKTGVVQVGVAINGEDARQAKEDTSLNVLDI 274
>At3g62680.1 68416.m07041 proline-rich family protein contains
proline-rich region, INTERPRO:IPR000694
Length = 313
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 140 PPVPKPDDHLPVNKESPERASPP 162
PPV KP PV K+SP +SPP
Sbjct: 142 PPVYKPTPSPPVYKKSPSYSSPP 164
>At5g17980.1 68418.m02109 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1049
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 140 PPVPKPDDHLPVNKESP-ERASPPLYEVELTASDE 173
PP P P++ P P E ASPPL E +E
Sbjct: 187 PPQPPPEESSPAEGPKPDEEASPPLQENATVGGEE 221
>At3g22070.1 68416.m02785 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 178
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 133 DLDMMQWPPVPKPDDHLPVNKESPERASPPL 163
DLD PP P D +P +P ASPPL
Sbjct: 128 DLDTTTAPPPPSTDIPIPPPPPAPVSASPPL 158
>At1g54440.1 68414.m06210 3'-5' exonuclease domain-containing
protein / helicase and RNase D C-terminal
domain-containing protein / HRDC domain-containing
protein similar to SP|Q01780 Polymyositis/scleroderma
autoantigen 2 {Homo sapiens}; contains Pfam profiles
PF00570: HRDC domain, PF01612: 3'-5' exonuclease
Length = 738
Score = 29.1 bits (62), Expect = 3.2
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 120 KVIPVLHCDEDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYE------VELTASDE 173
KVI V+ D+DD+D D + K D L E+P + SP L + E+ D+
Sbjct: 649 KVIIVV--DDDDDDDDDESYEQSTKAADALDRVSETPSKGSPSLTQKPKTCNTEVIVLDD 706
Query: 174 DEDTSVLE 181
D+D+ E
Sbjct: 707 DDDSESRE 714
>At1g26795.1 68414.m03262 self-incompatibility protein-related
similar to S3 self-incompatibility protein [Papaver
rhoeas] GI:1107841
Length = 151
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 106 FSDYHTVINNRHKLKVIPVLHCDEDDEDLDMMQWPPVPKPDDHLPVN 152
F+ H +I N+ + ++HC EDL +++ P+ + D VN
Sbjct: 38 FARKHVIIINKLVTRATLIVHCTNKGEDLGVIRLNPLDRFDFRFRVN 84
>At5g25520.2 68418.m03037 transcription elongation factor-related
contains weak similarity to transcription elongation
factors
Length = 997
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 127 CDEDDEDLDMMQWPPVPKPDDHLP 150
CD+DDED+ P K DD LP
Sbjct: 858 CDDDDEDMPPGFGPVAAKDDDDLP 881
>At3g27260.1 68416.m03407 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 813
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 119 LKVIPVLHCDEDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVE 167
++ +P + + +DE + PP K PV + PE P + EVE
Sbjct: 286 MQTLPAVTLEPNDERKAAISVPPAKKRKMASPVRESVPEPVKPLMTEVE 334
>At1g51540.1 68414.m05801 kelch repeat-containing protein contains
Pfam profile PF01344: Kelch motif
Length = 1036
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 131 DEDLDMMQWPPVPKPDDHL 149
DE++ PP+PKPD H+
Sbjct: 921 DEEMKWKVMPPMPKPDSHI 939
>At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger)
family protein predicted proteins, Arabidopsis thaliana
; contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 411
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/55 (34%), Positives = 24/55 (43%)
Query: 137 MQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDEDEDTSVLELVIPMQSSRY 191
+Q PP P P + N +AS P YE L S +TS LV +S Y
Sbjct: 54 IQIPPKPTPSLGILRNLSLKRKASLPNYERRLLLSPSVSETSEKPLVASPITSPY 108
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 79 ACRTKIASLVVWLCKAIEGFTGELASAF-SDYHTVINNR 116
A R + LV W+ K I GF+ + +F DYH + R
Sbjct: 896 AGRNAMTDLVPWMQKPISGFSMSVVVSFQDDYHNDVGLR 934
>At3g07730.1 68416.m00933 expressed protein
Length = 473
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 112 VINNRHKLKVIPVLHCDEDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTAS 171
++N + +P++ DEDD+D D+M DHL + +++S EV+ AS
Sbjct: 16 MVNEMSEKIDVPIICLDEDDDDDDLMVDKEYNVFLDHL---RRGDKKSSSTRLEVDNGAS 72
Query: 172 D 172
D
Sbjct: 73 D 73
>At2g25430.1 68415.m03046 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain;
Length = 653
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 128 DEDDEDLDMMQWPPVPKPDDHLPVNKESPE-RASPPLYEVELTASDEDEDTS 178
+E++ + DM + +P P+++ P PE + P + +L EDE T+
Sbjct: 396 EEEEPEPDMNEIKALPPPENYTPPPPPEPEPQPEKPQFTEDLVNLREDEVTA 447
>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
family protein similar to Transcriptional repressor
rco-1 (SP:P78706) [Neurospora crassa]; similar to
TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
Length = 648
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 128 DEDDEDLDMMQWPPVPKPDDHLPVNKESPERASPPLYEVELTASDEDED 176
+E+DE++ MM PP PK ++ + + + PP SDED D
Sbjct: 104 EEEDEEV-MMGPPPPPKGLGNINDSDDEGDMIGPPPPPPAARDSDEDSD 151
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.137 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,903,316
Number of Sequences: 28952
Number of extensions: 239201
Number of successful extensions: 726
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 706
Number of HSP's gapped (non-prelim): 24
length of query: 266
length of database: 12,070,560
effective HSP length: 80
effective length of query: 186
effective length of database: 9,754,400
effective search space: 1814318400
effective search space used: 1814318400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
- SilkBase 1999-2023 -